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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAAgtaaatcccatagaactctctctatgtccattttaacttcttctctcagaaatctgattctttttcgcttgatgtag

Basic information

species Arabidopsis thaliana
transcript AT1G67850.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67850.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA11G37770.1 (Glycine max), 5'ss of exon 13
CCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAAgtaaatcc-----catagaactctctctat------gtcca---ttttaacttcttctctcagaaatctgattctttttcgcttgatgtag
||||||||||||||||| ||||| ||||||||||| ||| | ||||| |||  | |||| || || || || || |||  | |     |||    |  |  |||       ||| |    |  |||   ||| || | ||| || |||||  ||  ||   || ||
CCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAGgtattttctttaccatgagtccatgactactctagagtctaagactaaaacaatttcactaaaaaaact-attctccttttctc--tgcag

upper sequence: AT1G67850.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv14s0036g00790.t01 (Vitis vinifera), 5'ss of exon 1
-------------------------CCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAAgtaaatcccat-----agaactctct-ctatgtccattttaacttcttctctcagaaatctgattctttttcgcttgatgtag-------------------------
                         ||||| |||||||| || ||||| || |||||||||||| ||||||||||| || |||| |  || || ||||| |||||||   |     | || | ||| |||  |   | || |  |   |  |  | |||   |   | | |    |    ||                          
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTTGCTCGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccattatgtttttatag

upper sequence: AT1G67850.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 5'ss of exon 8
CCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAAgtaaatcccat-----agaactctct-ctatgtccattttaacttcttctctcagaaatctgattctttttcgcttgatgtag-------------------------
||||| |||||||| || ||||| || |||||||||||| || |||||||| ||||||| || ||||| ||||| |||||||   |     | || | ||| |||  |   | || |  |   |  |  | |||   |   | | |    |    ||                          
CCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag

upper sequence: AT1G67850.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 13
CCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAAgtaaatc--ccatagaactctctctatgtccattttaacttcttct----ctcagaaatctgattctttttcgcttgatgtag-------------------------
||||| |||||||| || ||||| || |||||||||||| ||||||||||| || |||| || ||||| ||||| |||||||  |   ||||  || |     | |||||| | || |        |  | |||   |   | | |    |    ||                          
CCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaacttttctactacatttttatttatataaatgttttgtaatgaaaagatctatgaaatagaatactggattaaccgctatgtttttatag

upper sequence: AT1G67850.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv17s0000g02780.t01 (Vitis vinifera), 5'ss of exon 1
-------------------------CCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAAgtaaat-----cccatagaactctct-ctatgtccattttaacttcttctctcagaaatctgattctttttcgcttgatgtag-------------------------
                         ||||| |||||||| || ||||| || |||||||||||| ||||||||||| || |||| || ||||| ||||| ||||||      |   | || | ||| |||  |   | || |  |   |  |  | |||   |   | | |    |    ||                          
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaataatcttcagaaaaattttctactacattgttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag

upper sequence: AT1G67850.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv13s0106g00570.t01 (Vitis vinifera), 5'ss of exon 4
CCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAAgtaaatcccat-----agaactctct-ctatgtccattttaacttcttctctcagaaatctgattctttttcgcttgatgtag-------------------------
||||| |||||||| || ||||| || ||||||||| || ||||||||||| || |||| || ||||| ||||| |||||||   |     | || | ||| |||  |   | || |  |   |  |  | |||   |   | | |    |    ||                          
CCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaaattttctactacatttttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag