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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTGATTGAGAGTGCATGCTCAGTGGAACGTGTTGAAGAAGCTCTAAGCACATTGCTCCCTATGTTGCCAGAAATACAATATTTTCGGTTCAACCCAGgtaacaaacagcattttacaacatgcaagaacactcttatcctgttgaacacctatgaaaccttgaatttcttatccatgccgatttccataatgcatgtgttttgacgtagaatctagttaatctttacatatctgggtatatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G61850.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA17G01850.1 (Glycine max), 5'ss of exon 13
GTACTGATTGAGAGTGCATGCTCAGTGGAACGTGTTGAAGAAGCTCTAAGCACATTGCTCCCTATGTTGCCAGAAATACAATATTTTCGGTTCAACCCAGgtaacaaacagcattttacaacatgcaagaacactcttatcctgttgaacacctatgaaaccttgaatttcttatccatgccgatttccataatgcatgtgttttgacgtagaatctagttaatctttacatatctgggtatatgcag
||  ||||||||||| ||||||| || || || || || |||||| |||| |||||||| || ||| | || || |||||||||||||| ||||| ||||||| |  | ||     |   |  ||||  | ||||  |  |      ||| ||  | ||  ||  |        |  |       |   |||   ||  |                                                
GTGTTGATTGAGAGTTCATGCTCTGTTGATCGGGTGGAGGAAGCTTTAAGTACATTGCTACCCATGCTTCCTGAGATACAATATTTTCGTTTCAATCCAGgtatctgatagagggctgatagctgcactaccactact-cctaagaaaacgccattaaaggctaaagggaaagctataaaaaagataaaatataacaactc-----------------------------------------------

upper sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA07G38890.1 (Glycine max), 5'ss of exon 12
GTACTGATTGAGAGTGCATGCTCAGTGGAACGTGTTGAAGAAGCTCTAAGCACATTGCTCCCTATGTTGCCAGAAATACAATATTTTCGGTTCAACCCAGgtaacaaacagcat-tttacaacatgcaagaacactcttatcctgttgaacacctatgaaaccttgaatttcttatccatgccgatttccataatgcatgtgttttgacgtagaatctagttaatctttacatatctgggtatatgcag
||  ||||||||||| ||||||| || || || || || |||||| |||| |||||||| || ||| | || || |||||||||||||| ||||| |||||||    | ||    || | | |   ||  | ||||  |  |      ||||||  | ||  ||  |        |  |       |   |||   ||  |                                                
GTGTTGATTGAGAGTTCATGCTCTGTTGATCGGGTGGAGGAAGCTTTAAGTACATTGCTACCCATGCTTCCTGAGATACAATATTTTCGTTTCAATCCAGgtatttgatagagggttgatagctaacactaccactact-cctaagaaaacaccattaaaggctaaagagaaagctataaaaaagataaaatataacaact------------------------------------------------

upper sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv10s0116g00830.t01 (Vitis vinifera), 5'ss of exon 13
GTACTGATTGAGAGTGCATGCTCAGTGGAACGTGTTGAAGAAGCTCTAAGCACATTGCTCCCTATGTTGCCAGAAATACAATATTTTCGGTTCAACCCAGgtaacaaacagcattttacaacatgcaagaacactcttatcctgttgaacacctatgaaaccttgaatttcttatccatgccgatttccataatgcatgtgttttgacgtagaatctagttaatctttacatatctgggtatatgcag
||  ||||||||||||| ||||||||||| || || || |||||| | ||||||||||| |||||| | || |||||||| ||||||||||| |||||||||||          || ||  ||| |      | |  ||  |  |   | |   ||| |||      |  || ||  || |   ||||| |  ||  | ||    ||  || |      ||                           
GTGTTGATTGAGAGTGCGTGCTCAGTGGATCGGGTAGAGGAAGCTTTGAGCACATTGCTACCTATGCTTCCTGAAATACATTATTTTCGGTTTAACCCAGgtaatgtg------ttgactgcatact----tatttatactccat---ataggcatggaac------tggctcatttattctactttccttt-tgtctatgaaa-gatataaagctccttt---------------------------