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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGAAAATCTTGATCTATGCCTAACGCCTTATAAGGTGTTAGCAACTGGACATGACGAAGGGATGTTGGAATTCATACCGTCCCGTTCTTTGGCTCAGgtacagtatcagtgcttaaacccattgcccccatgcctaagtaattttgaccctctcttataattttgagagtagctaatctcgttatcctgtgatatgtgcctttgcatgtttag

Basic information

species Arabidopsis thaliana
transcript AT1G60490.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G60490.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA06G10090.1 (Glycine max), 5'ss of exon 13
GCTGGAAAATCTTGATCTATGCCTAACGCCTTATAAGGTGTTAGCAACTGGACATGACGAAGGGATGTTGGAATTCATACCGTCCCGTTCTTTGGCTCAGgtacagtatcag------tgcttaaacccattgcccccatgcctaagtaattttgaccctctcttataattttgagagtagctaatctcgttatcctgtgatatgtgcctttgcatgtttag
| | |||||||||||||||  |||||| || || |||||| ||||||||||||| || ||||| ||||||||||| || || ||||| || ||||| || |||   |   |       |  | ||| |  || |    ||    | ||| |          | || | | |    |  ||    |  | | | |   |||                      
GTTAGAAAATCTTGATCTACACCTAACACCATACAAGGTGCTAGCAACTGGACAAGATGAAGGCATGTTGGAATTTATTCCATCCCGCTCATTGGCACAAgtatgctgatatacttttttttaaaagctgtttcttgtattagcatgtagtcaatgtttctttttgtgactgaaggtttattctaaattgatgtatagtg----------------------

upper sequence: AT1G60490.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA04G10090.1 (Glycine max), 5'ss of exon 13
GCTGGAAAATCTTGATCTATGCCTAACGCCTTATAAGGTGTTAGCAACTGGACATGACGAAGGGATGTTGGAATTCATACCGTCCCGTTCTTTGGCTCAGgtacagtatcag-----tgcttaaacccattgcccccatgcctaagtaattttgaccctctcttataattttgagagtagctaatctcgttatcctgtgatatgtgcctttgcatgtttag
| ||||||||||||||||   |||||| || || |||||| ||||||||||||| || ||||| ||||||||||| || || || || || ||||| ||||||  ||   |      |  | |||    || |    ||    | ||| |     |    | || | | ||  | |  || | |     |||    | ||                     
GTTGGAAAATCTTGATCTGCACCTAACACCATACAAGGTGCTAGCAACTGGACAAGATGAAGGCATGTTGGAATTTATTCCATCTCGCTCATTGGCACAGgtatggtgatatactttttttaaaagttgtttcttgtattagcacgtagtcactgcttctttttgtgactt--aaaagagttgagagaattagggagagaag-------------------

upper sequence: AT1G60490.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 13
GCTGGAAAATCTTGATCTATGCCTAACGCCTTATAAGGTGTTAGCAACTGGACATGACGAAGGGATGTTGGAATTCATACCGTCCCGTTCTTTGGCTCAGgtacagtatcagtgcttaaacccattgcccccatgcctaagtaattttgaccctctcttataattttgagagtagctaatctcgttatcctgtgatatgtgcctttgcatgtttag
  |||| ||||||||||||  | |||| || || |  ||  ||||||||||||| || ||||| ||| ||||||||||||| ||| | |||||||| |||||| |    |  ||    ||      ||  |  ||   |   || | ||        |||||||     | | |  ||  || | | ||   |||||  ||  ||   | |     
ATTGGAGAATCTTGATCTACACTTAACTCCGTACAGAGTACTAGCAACTGGACAGGATGAAGGCATGCTGGAATTCATACCATCCAGCTCTTTGGCGCAGgtagatatcctctgtaagaa------gcttctttgatgagagaagtgtgtttaatgtttataat-----gggcattta--cttggtttctattgataactgagttgcaaagca---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164045462|gb|ES204717.1|ES204717
EST:     GACATGACGAAGGGATGTTGGAATTCATACCGTCCCGTTCTTTGGCTCAG                         ATTCTCTCAGAGCACCGAAGCATAACAA
genomic: GACATGACGAAGGGATGTTGGAATTCATACCGTCCCGTTCTTTGGCTCAGgtacagtatc ... gcatgtttagATTCTCTCAGAGCACCGAAGCATAACAA