1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTGCTTTCCAACGATAACGTGAAATTCGGTTACAATGCTGCAACCGGCAAGTACGAGGATTTGATGGCTGCAGGAATCATCGATCCAACAAAGgtaagttttctgtgcatatacagaaactgtctttgctagctaaattggtcatcaaagatccatgaacctgagtggctttatcttgattttag
species | Arabidopsis thaliana |
transcript | AT1G55490.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CCGGCAAGTACGAGGATTTGATGGCTGCAGGAATCATCGATCCAACAAAG GTTGTGAGATGTTGCTTGGAACACGCAGCTTCGGTTGCAAAGACTTTYTTGEST: gi|125136638|gb|EL176668.1|EL176668
genomic: CCGGCAAGTACGAGGATTTGATGGCTGCAGGAATCATCGATCCAACAAAGgtaagttttc ... ttgattttagGTTGTGAGATGTTGCTTGGAACACGCAGCTTCGGTTGCAAAGACTTTCTTG
EST: ATCATCGATCCAACAAAG GTTGTGAGATGTTGCTTGGAACACGCAGCTTCGGTTGCAAAGACTTTCTTGEST: gi|125110164|gb|EL162259.1|EL162259
genomic: ATCATCGATCCAACAAAGgtaagttttc ... ttgattttagGTTGTGAGATGTTGCTTGGAACACGCAGCTTCGGTTGCAAAGACTTTCTTG
EST: GGATTTGATGGCTGCAGGAATCATCGATCCAACAAAG GTTGTGAGATGTTGCTTGGAACACGCAGCTTCGGTTGCAAAGACTT
genomic: GGATTTGATGGCTGCAGGAATCATCGATCCAACAAAGgtaagttttc ... ttgattttagGTTGTGAGATGTTGCTTGGAACACGCAGCTTCGGTTGCAAAGACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTTTCCAACGATAACGTGAAATTCGGTTACAATGCTGCAACCGGCAAGTACGAGGATTTGATGGCTGCAGGAATCATCGATCCAACAAAGgtaagttttctgtgcatatacagaaactgtctttgctagctaaattggtcatcaaagatccatgaacctgagtggctttatcttgattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG