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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGATTATTTCTGGTATGGGGGAATTGCATTTGGACATCTATGTTGAACGCATGCGGAGAGAATATAAGgtacctgacttttaaaccttcacaatgttcttctcaaccaaactcttattttctacttaattttggaaatatcaaatag

Basic information

species Arabidopsis thaliana
transcript AT1G45332.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G45332.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 5'ss of exon 13
ACGATTATTTCTGGTATGGGGGAATTGCATTTGGACATCTATGTTGAACGCATGCGGAGAGAATATAAGgtacctgacttttaaaccttcacaatgttcttctcaaccaaactcttattttctacttaattttggaaatatcaaatag------------------------
|| ||||||||||| ||||| ||  |||||||||| |||||||||||||||||  ||||||| || ||||||    |   |||   |      ||| |    ||  |        ||| | | |   ||||| |||   ||   ||                          
ACAATTATTTCTGGGATGGGTGAGCTGCATTTGGATATCTATGTTGAACGCATCAGGAGAGAGTACAAGgtaatgtatacttaggtcaatggcatgattcgttcccctgg--ctatatgtgcaatgcaatttaggattgat-ggatgtttattgtactaaaagcttgtctgt

upper sequence: AT1G45332.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA11G16460.1 (Glycine max), 5'ss of exon 13
ACGATTATTTCTGGTATGGGGGAATTGCATTTGGACATCTATGTTGAACGCATGCGGAGAGAATATAAGgtacctgacttttaaaccttcaca-----atgttctt-ctcaaccaaact---cttattttctacttaattttggaaat-atcaaatag---------------
|| || |||||||| ||||||||| ||||||| || |||||||||||||||||  ||||||| |||||||||||   ||||| | ||| ||||     || ||||| ||    | ||     |  | | | | ||| || | |    | ||    | |               
ACAATCATTTCTGGAATGGGGGAACTGCATTTAGATATCTATGTTGAACGCATTAGGAGAGAGTATAAGgtacc---cttttcatcctccacatatttattttctttcttgttcgaagctggccaaatgtttgcttcatctggagtttcattcttttgtctttacctgttaag

upper sequence: AT1G45332.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 8
ACGATTATTTCTGGTATGGGGGAATTGCATTTGGACATCTATGTTGAACGCATGCGGAGAGAATATAAGgtacctgacttttaaaccttcaca-----atgttcttctcaaccaaactct---tattttctacttaattttggaaatatcaaatag------------------
|| || |||||||| ||||||||| ||||||| || |||||||||||||||||  ||||||| |||||||||||    |||| | ||| ||||     || |||||         |  ||    | | | | ||| ||||  | | | |||    |                  
ACAATCATTTCTGGAATGGGGGAACTGCATTTAGATATCTATGTTGAACGCATTAGGAGAGAGTATAAGgtacca---ttttcatcctccacatgtttattttctttcttgttggaagctggccaatgtttgcttcattt--ggagtttcattctgttgtctttacctgttaag

upper sequence: AT1G45332.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 13
ACGATTATTTCTGGTATGGGGGAATTGCATTTGGACATCTATGTTGAACGCATGCGGAGAGAATATAAGgtacctgacttttaaaccttcac--aatgttcttctca-accaaactcttattttctacttaattttggaaatatcaaatag---------------------------------------------------------------
|| ||||||||||| ||||| ||  ||||||||||||| || ||||||||||| ||||| || |||||||| ||||   |||    |||     |||    |  |   |    | | | |||    | |  ||| | | |  ||     |                                                                
ACAATTATTTCTGGAATGGGAGAGCTGCATTTGGACATTTACGTTGAACGCATTCGGAGGGAGTATAAGgtgcctggtctttttgtctttctttaatacagtgatgggattctagtatgattgctaattcgattctagtatgattgctaattcaaaatcttcacctgtatacttaagtactctctctttccctctttaatttacctttatgaag