Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGCTGGAGATAATATCCAAGCAAGCAATGGTGAAAAATACAGGTGCGAGGGGACTAAGAGCCTTACTTGAAAGCATTCTTACCGAAGCCATGTTTGAGgtaacttcagctaccacaaatattgttaaggtactaatataaatcttgctttcacacttctgtttgatttctcttttcag

Basic information

species Arabidopsis thaliana
transcript AT1G33360.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G33360.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA09G28260.1 (Glycine max), 5'ss of exon 14
AGCGCTGGAGATAATATCCAAGCAAGCAATGGTGAAAAATACAGGTGCGAGGGGACTAAGAGCCTTACTTGAAAGCATTCTTACCGAAGCCATGTTTGAGgta------acttcagctaccacaaatattgttaaggtactaatataaatctt--gctttcaca--cttctgtttgatttctcttttcag----------------------------
 || ||   | | ||| | ||  |||| ||||  |||||||| ||||| |||||  |||||||| |||| ||||||||| | |||||||||||||||||||||      | ||    ||     || ||   |||  ||   ||||  |||||    | |||||  ||     |    |  | |||| |                             
TGCTCTAAGGCTGATAGCAAAAAAAGCGATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCCCTACTGGAAAGCATTTTAACCGAAGCCATGTTTGAGgtattgaacagtttgtttattcttaaaatatctaat-tatctatatctatcttcaagtatcacaaactatcactctcctattttttttactaacacataccatgcttatttgcaccag

upper sequence: AT1G33360.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA20G35600.1 (Glycine max), 5'ss of exon 13
AGCGCTGGAGATAATATCCAAGCAAGCAATGGTGAAAAATACAGGTGCGAGGGGACTAAGAGCCTTACTTGAAAGCATTCTTACCGAAGCCATGTTTGAGgtaacttcagctaccacaaatattgttaaggtactaatataaatcttgctttcacacttctgtttgatttctc---ttttcag-----------------------------
||| |||    | ||  | ||| |||||||||  |||||||| ||||| |||||  |||||||  |||| ||||||||| | || ||||||||||||||||||     |  |       || ||   ||  || |  | |   ||  || |  |    | |   || |  |||   | ||||                              
AGCTCTGAGATTGATTGCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCACTACTGGAAAGCATTTTAACTGAAGCCATGTTTGAGgtacgaaaaagtcttttttatttttaaaatatattgctgtcc-tcaagcatctatgactatcagtggtccctccgatcttcaactaatacattgagtgcttgtatgcatcag

upper sequence: AT1G33360.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA10G32040.1 (Glycine max), 5'ss of exon 12
AGCGCTGGAGATAATATCCAAGCAAGCAATGGTGAAAAATACAGGTGCGAGGGGACTAAGAGCCTTACTTGAAAGCATTCTTACCGAAGCCATGTTTGAGgtaa-----------cttcagctaccacaaatattgttaaggt-actaatataaatcttgctttcacacttctg---tttgatttctcttttcag----------------
||| |      | ||  | ||| | |||||||  ||||| || |||||||||||  |||||||  |||| ||||||||| | |||||||| |||| |||||||             || |  ||  | | |||||| |    | |   || |||  ||  |  |    | ||||   ||  | |  | | || ||                
AGCTCATAGATTGATTGCAAAGAAGGCAATGGCCAAAAAAACTGGTGCGAGGGGTTTAAGAGCACTACTGGAAAGCATTTTAACCGAAGCTATGTATGAGgtacgaaaaagtcttttttacttataaaatatattgctgtcctcaagcatctaagactatcagtggtccctctgatcttaaactaatatattgagtgcttgtatgcatcag