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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCCATGGTCTTCTACGAGTATTCTGGTCTCCAAAATCTCTACGATATAGTAAGATACTGTCAGgtacgctgattcatttccatttcctgaagcattatcgttattgcacctgtaaatatctggagcaagctgtggcaatcagcaccaacttccgagagaattg...

Basic information

species Arabidopsis thaliana
transcript AT1G31360.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31360.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 13
AGTTCCATGGTCTTCTACGAGTATTCTGGTCTCCAAAATCTCTACGATATAGTAAGATACTGTCAGgtacgctgattcatttccatttcctgaagcattatcgttattgcacctgtaaatatctggag---caagctgtggcaatcagcaccaacttccgagagaattg
||||| ||||||||||| ||| |||||||  | ||||||||||| || ||||||  ||| |||||||||   |  || || |   |      |  ||| |   ||| ||        |  ||    |    |||||| |    |      | |  ||       | || 
AGTTCAATGGTCTTCTATGAGAATTCTGGATTGCAAAATCTCTATGACATAGTACAATATTGTCAGgtatagttcttaatctt-gtgaagcaagtcataa--attactgtttagaagagaattaaaacttccaagctttttacactcatgcaattttttattttatttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164138259|gb|ES036794.1|ES036794
EST:     TAGTAAGATACTGTCAG                         TCTAAAACAAAATGTCGTCGAAGCGCA-TTTTCCGTCATTTTGGGGAACCA
genomic: TAGTAAGATACTGTCAGgtacgctgat ... cttcttgcagTCTAAAACAAAATGTCGTCGAAGCGCATTTTTCCGTCATTTTGGGGAACCA