Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAGATACCATCTATGAATGGATACACAATGGGACTAAAACTAGAACAATTCATTTTTGATTCGTTTCCTTATGCTCCTTCAACCGCACTTTTTGAGgtatagtatcaattcatttttacacaatatactaactaaagaaaccaaatattaaaaactgagaaattgggttgtgctatgtgtag

Basic information

species Arabidopsis thaliana
transcript AT1G31070.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31070.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA05G26240.2 (Glycine max), 5'ss of exon 13
GAAGAAGATACCATCTATGAATGGATACACAATGGGACTAAAACTAGAACAATTCATTTTTGATTCGTTTCCTTATGCTCCTTCAACCGCACTTTTTGAGgtatagtatcaattcatttttacacaatatactaactaaagaaaccaaatattaaaaactgagaaattgggttgtgctatgtgtag----------------
|||||| ||||| || ||  ||||||| ||||||||| ||||||| ||||| || || |||||| | ||||| ||||||||| |||| ||||||||||||||  | ||| |||||    ||  |  | |||     |       |||||| |  |  |        || |||    | |  | ||                 
GAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAGgtg-aatat-aattctaaattggattaaatatctttttggtcctccaaatttggaccaagtttgctttaggtccctcaaattttaaagtgattttcttagtc

upper sequence: AT1G31070.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 14
GAAGAAGATACCATCTATGAATGGATACACAATGGGACTAAAACTAGAACAATTCATTTTTGATTCGTTTCCTTATGCTCCTTCAACCGCACTTTTTGAGgtatagtatcaattcatttttacacaatatactaactaaagaaaccaaatattaaaaactgagaaattgggttgtgctatgtgtag-----------------------------------------------------------------------------------------------------------------
|||||| ||||| || ||  ||||||| ||||||||| ||||||| ||||| || || |||||| | ||||| ||||||||| | || ||||||||||||||  | ||| | |  |  ||  |  || |||     |        ||||| ||  |    |     ||  ||    | |  | ||                                                                                                                  
GAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtg-actataattctaaattggcttaa-atatctttttggtccttcaaat-ttggactaagtttgcttttgtccctcaaattttaaattgattttcttttcctgatttggaaatagtctacacttgatccttaatttgtgatctctttagtccctaataaagaccaaaagcgagctactcattatgcatccatgttcag

upper sequence: AT1G31070.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 13
GAAGAAGATACCATCTATGAATGGATACACAATGGGACTAAAACTAGAACAATTCATTTTTGATTCGTTTCCTTATGCTCCTTCAACCGCACTTTTTGAGgtatagtatcaat-tcatttttac---acaatatactaactaaagaaaccaaatattaaaa--actgagaaattgggttgtgcta-tgtgtag
|||||| ||  | || |   | ||||||||||||||| |||||||||| || || || |||||| | ||||| ||||| |||||||| ||||||| ||||||    | ||  | ||| ||| ||    |||| || |  |  |    ||   || ||||    |||   |||||    || || | | |  ||
GAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCAACTGCACTTTATGAGgtgatttttctctctcactttgacccagcaatttattttcccatctcacttgattttaatctcacttgaaaatttctctgcgccaatattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124928113|gb|EL005785.1|EL005785
EST:     ATTCGTTTCCTTATGCTCCTTCAACCGCACTTTTTGAG                         GTTTTAAGGGAAGAGGAGTTTGCACCAGTGAAGAATAGTTAACGGGTCTAA
genomic: ATTCGTTTCCTTATGCTCCTTCAACCGCACTTTTTGAGgtatagtatc ... ctatgtgtagGTTTTAAGGGAAGAGGAGTTTGCACCAGTGAAGAAT-GTTAACGGGTCTAA