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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAGGCATCATTGAGGAAGGGAAGGCAACCCTAAGAATGAAGCAAGATATGCAGAGTGACAATTTTAATATGTATGATCTTATTGCCTATCGAATAAAGgcaagtgaaactaaaatcctctctagttacatataaaaagtaggctctctctcttcttttcctgtctgacttgttaatatgctttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G25350.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 13
ACGAGGCATCATTGAGGAAGGGAAGGCAACCCTAAGAATGAAGCAAGATATGCAGAGTGACAATTTTAATATGTATGATCTTATTGCCTATCGAATAAAGgcaagtga--aactaaaatcctctctagttacatataaaaagtaggctctctctcttcttttcctgtctgacttgttaatatgctttgcag
|   ||||  || || ||||| || || || || |||||||||||||| ||||||||||| || |  ||||||||||| |||||||| ||| |||| |||||||||    ||||| | |  | | | | |  |  |   | | ||    |   |  | | ||    | ||| |  ||  |    |||    
AAATGGCAGTATAGAAGAAGGAAAAGCCACACTTAGAATGAAGCAAGACATGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAGgcaagtactcaactacatttttttattgctcaaatttctaggaagataatgattgatttcttatgatgtgaatgctttctgcattttag--

upper sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 13
ACGAGGCATCATTGAGGAAGGGAAGGCAACCCTAAGAATGAAGCAAGATATGCAGAGTGACAATTTTAATATGTATGATCTTATTGCCTATCGAATAAAGgcaagtg--aaactaaaatcctctctagtt-acatataaaaagtaggctctctctcttcttttcctgtctgacttgttaatatgctttgcag
|   ||||  || || ||||| || || || || ||||||||||| || ||||||||||| || |  ||||||||||| |||||||| ||| |||| |||| ||||    ||||  | |  | | | | | | || |     | ||    |   |  | | ||      ||| |  ||  |     ||    
AAATGGCAGTATCGAAGAAGGAAAAGCCACTCTTAGAATGAAGCAGGACATGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAGgtaagtactcaactgcatttttttattgctcaaatttctttgggagataataatttatttcttatgacgtgaatgctttctgcatcttag--

upper sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 13
ACGAGGCATCATTGAGGAAGGGAAGGCAACCCTAAGAATGAAGCAAGATATGCAGAGTGACAATTTTAATATGTATGATCTTATTGCCTATCGAATAAAGgcaagtgaaactaaaatcctctctagttacatataaaaagtaggctctctctcttcttttcctg-tctgacttgttaatatgctttgcag
||| || || ||||| |||||||| || || || |||||||||||||| ||||||||||| |||| ||||||||||||||| ||||| ||||| || ||||||||||   ||||  |     |  |||  |  | | |   | | |    |||||  ||    | | |||| | ||  |      | |||
ACGGGGAATGATTGAAGAAGGGAAAGCGACACTCAGAATGAAGCAAGACATGCAGAGTGATAATTATAATATGTATGATCTCATTGCATATCGTATCAAGgcaagtg---ctaacctttgaacatgttgtagctcacattcaaggtactactctttattcaagggtttgacatttttgttattcgtccag

upper sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 13
ACGAGGCATCATTGAGGAAGGGAAGGCAACCCTAAGAATGAAGCAAGATATGCAGAGTGACAATTTTAATATGTATGATCTTATTGCCTATCGAATAAAGgcaagt--gaaactaaaatcctctctagttacatataaaaagtaggctctctctcttcttttcctgtctgacttgttaatatgctttgcag-----------------------
||||||||| ||||| ||||| || || || ||  | ||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||| || |||||||||  | |   | |  | |||  | |     |  |  |||||   ||   |   || |         |          |  ||   |                        
ACGAGGCATGATTGAAGAAGGCAAAGCTACGCTTCGGATGAAGCAAGACATGCAGAGTGATAATTTTAATATGTATGACCTTATTGCATATCGCATCAAGgcaagtctgtactcatagacatcttaactatttcaacatgagtagttactaaattacctatcaaaaaaaaaaaaacatgagtagttactaattgatttcacttcttttgtccag