1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AACAAGCTGGAAAAGTGCCAGACGTTTTCTACTGTCTCAAGCTCTTAGAAGCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatctgctactactgtttctttcttgctcatctgatctcttcttatgaactcattccacttgtggattttgacag
species | Arabidopsis thaliana |
transcript | AT1G23310.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CCTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAEST: gi|124855986|gb|EH940423.1|EH940423
genomic: CCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGA
EST: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATEST: gi|124883183|gb|EH962085.1|EH962085
genomic: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAAT
EST: CAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAEST: gi|125074427|gb|EL138371.1|EL138371
genomic: CAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGA
EST: CACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAEST: gi|125125707|gb|EL171142.1|EL171142
genomic: CACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGA
EST: TTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAEST: gi|124811997|gb|EH896863.1|EH896863
genomic: TTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGA
EST: GACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAEST: gi|86074135|gb|DR369892.1|DR369892
genomic: GACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGA
EST: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCATCTGEST: gi|124909400|gb|EH983480.1|EH983480
genomic: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTG
EST: ATTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGACCGGEST: gi|125235276|gb|EL249361.1|EL249361
genomic: ATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATG-CCGG
EST: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTEST: gi|125057612|gb|EL126735.1|EL126735
genomic: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCT
EST: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGAEST: gi|86076020|gb|DR371777.1|DR371777
genomic: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGA
EST: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAEST: gi|124729686|gb|EH821088.1|EH821088
genomic: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGA
EST: TCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGGAGATGAGATGCCGGAEST: gi|125259321|gb|EL273406.1|EL273406
genomic: TCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGA
EST: ACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAEST: gi|125162056|gb|EL188912.1|EL188912
genomic: ACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGA
EST: CTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGEST: gi|116375796|gb|EG418388.1|EG418388
genomic: CTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAG
EST: GCCACAGGAATCTCCACAGTACCTGGTTCTGGATTGGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAEST: gi|86087902|gb|DR383661.1|DR383661
genomic: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGA
EST: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAEST: gi|164078549|gb|ES112299.1|ES112299
genomic: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGA
EST: GAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCAATCTGAGGACAACAATCCEST: gi|116375777|gb|EG418369.1|EG418369
genomic: GAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCA-TCTGAGGACAACAATCC
EST: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAEST: gi|124890043|gb|EH968945.1|EH968945
genomic: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGA
EST: GTACCTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAEST: gi|125323144|gb|EL337226.1|EL337226
genomic: GTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGA
EST: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAAEST: gi|125211983|gb|EL226937.1|EL226937
genomic: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAA
EST: GTACCTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCATCTGTAGGACAACAATCCTEST: gi|125225695|gb|EL239780.1|EL239780
genomic: GTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTG-AGGACAACAATCCT
EST: ATTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAEST: gi|124706919|gb|EH798321.1|EH798321
genomic: ATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGA
EST: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGG TGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGA
genomic: GCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc ... attttgacagTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAAGCTGGAAAAGTGCCAGACGTTTTCTACTGTCTCAAGCTCTTAGAAGCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatctgctactactgtttctttcttgctcatctgatctcttcttatgaactcattccacttgtggattttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG