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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAACACGTACTTCCCCTGATTATACCACTTCTCACTGCCCAACAATTGAATGTCCAACAGTTTGCCAAATATATTCTATTTGTCAAAGATATTCTCAGgtatacctccgaccaatcctgtcctgtttccaagttcttattccccttataactgcatactgttgtaattgttttcaacatctggtttgtctatcctctggtcactgaacag

Basic information

species Arabidopsis thaliana
transcript AT1G22870.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 13
CAGAACACGTACTTCCCCTGATTATACCACTTCTCACTGCCCAACAATTGAATGTCCAACAGTTTGCCAAATATATTCTATTTGTCAAAGATATTCTCAGgta-tacctcc--------gaccaatcctgtc---ctgtttccaagttcttattccccttataactgcatactgttgtaattgttttcaacatctggtttgtctatcctctggtcactgaacag
| || || || |||||  || ||||||| || || ||||| |||||||||||||| |||||||||||||||||||| || |||||||| ||||| |||  ||| ||  | |         |  |||   | |   || |||     |   | |   ||| ||        |    ||  |   || ||   |  |  ||| | |   || ||  | ||| ||||
CTGAGCATGTTCTTCCATTGCTTATACCCCTGCTGACTGCTCAACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatattttcttttttaaaaaaaattaagcccctctattttttgttatctgtcttcctcattgtccttaatctctgacaaacttctctttaattttttt-tttgaactttgtgctctgtacag

upper sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 13
CAGAACACGTACTTCCCCTGATTATACCACTTCTCACTGCCCAACAATTGAATGTCCAACAGTTTGCCAAATATATTCTATTTGTCAAAGATATTCTCAGgta---tacctccgaccaatcctgtcctgtttccaagttcttattccccttataactgcat-actgttgtaattgttttcaacatctggtttgtctatcctctggtcactgaacag---------------
| || ||  | |||||  || |||| || || || ||||| | |||||||||||| |||||||||||||||||||| || |||||||| ||||| |||  |||   |   |   |  ||| ||   |    ||    || |||||    || |  ||   | | |||  |   | | |   | |  |   || | | |  | |  | |   || |                
CTGAGCATCTTCTTCCATTGCTTATGCCCCTGCTGACTGCTCCACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatttttttttaaataattcttaaccccctcattttttttatttattttctgtctttctcattgtccttgatctctgacaaacttctcttttttttttttttttaaaaaaaaaactgtgttctgtatag

upper sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 13
CAGAACACGTACTTCCCCTGATTATACCACTTCTCACTGCCCAACAATTGAATGTCCAACAGTTTGCCAAATATATTCTATTTGTCAAAGATATTCTCAGgtat----------------acctccgaccaatcctgtcctgtttccaagt--tcttattccccttataactgcatactgttgtaattgttttcaacatctggtttgtctatcctctggtcactgaacag---
| || || || ||||| ||  | | ||| ||||||| ||| |||||||||||||| ||||||||||| || || || || ||||| || ||||| |||||||||                  | |  |    |||| || | | | || ||  | | ||     |  |     || ||    | ||    ||  ||  | |   ||   | |  | | |    |  | |    
CTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCTTTGTTAAGGATATCCTCAGgtattataaactgattgactgtccctaaattctcctatcttctctgcatgtgttttcatctgaatgctgtgctcagaccaccgaaaagccttgaaatgtttcccttcctttttttgttgctgttttataacag