1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGTGCTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTCCAACCAGgttctctacctataaagaaccttacttgcctaaagtagctcacatgttcatatagtatcgaattaattgacaacattctctttaccttcag
species | Arabidopsis thaliana |
transcript | AT1G20260.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTCCAACCAG CTATACGCAAATTATGCAATCGGAAAAGATGTTCAAGCCATGAAAGCTGTTEST: gi|125084301|gb|EL144555.1|EL144555
genomic: CTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTCCAACCAGgttctctacc ... ttaccttcagCTATACGCAAATTATGCAATCGGAAAAGATGTTCAAGCCATGAAAGCTGTT
EST: CTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTCCAACCAG CTATACGCAAATTATGCAATCGGAAAAEST: gi|86084595|gb|DR380354.1|DR380354
genomic: CTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTCCAACCAGgttctctacc ... ttaccttcagCTATACGCAAATTATGCAATCGGAAAA
EST: CTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTCCAACCAG CTATACGCAAATTATGCAATCGGAAAAGATGTTCAAGCCATGAAAGCTGTTEST: gi|164089658|gb|ES095046.1|ES095046
genomic: CTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTCCAACCAGgttctctacc ... ttaccttcagCTATACGCAAATTATGCAATCGGAAAAGATGTTCAAGCCATGAAAGCTGTT
EST: GCAAAGACCATTCTGATGTGTCCAACCAG CTATACGCAAATTATGCAATCGGAAAAGATGTTCAAGCCATGAAAGCTGTTEST: gi|116428286|gb|EG470878.1|EG470878
genomic: GCAAAGACCATTCTGATGTGTCCAACCAGgttctctacc ... ttaccttcagCTATACGCAAATTATGCAATCGGAAAAGATGTTCAAGCCATGAAAGCTGTT
EST: CTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTCCAACCAG CTATACGCAAATTATGCAATCGGAAAAGATGTTCAAGCCATGAAAGCTGTTEST: gi|116428287|gb|EG470879.1|EG470879
genomic: CTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTCCAACCAGgttctctacc ... ttaccttcagCTATACGCAAATTATGCAATCGGAAAAGATGTTCAAGCCATGAAAGCTGTT
EST: CTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTCCAACCAG CTATACGCAAATTATGCAATCGGAAAAGATGTTCAAGCCATGAAAGCTGTTEST: gi|125091293|gb|EL149116.1|EL149116
genomic: CTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTCCAACCAGgttctctacc ... ttaccttcagCTATACGCAAATTATGCAATCGGAAAAGATGTTCAAGCCATGAAAGCTGTT
EST: CTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTCCAACCAG CTATACGCAAATTATGCAATCGGAAAAGAT
genomic: CTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTCCAACCAGgttctctacc ... ttaccttcagCTATACGCAAATTATGCAATCGGAAAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGCTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTCCAACCAGgttctctacctataaagaaccttacttgcctaaagtagctcacatgttcatatagtatcgaattaattgacaacattctctttaccttcag
- - - - - - AAGGAA
- - - - - - - - - - - - GCAAAG