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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcattcactagtatatcacgattaagtggccagacaaatgatgccactacattcataccattatcattgtttttgtccag

Basic information

species Arabidopsis thaliana
transcript AT1G18410.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 5'ss of exon 14
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactca--ttcactagtatatcac-gattaagtggc-cagacaaatgatgccactacattcataccattatcattgtttttgtccag-------------------------------------------------------------
 || || || ||  |||| || ||||||||||||||||| || | |||||| ||||| ||||| |||||||| || || ||||| |||||||||||||||||||| |  || ||   ||| | || |  | ||       |  || | ||        ||   |   |||   |||||  | || |||                                                             
TTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTACACAATGgtactaacttttaccgatattttactggctcagcattgttgttaacttatattg----atcttttttattggtattgtactggttcagcatgatgcactgctactaacttttgatcacttatgttctattccaataattttgttcttag

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os06g36080.1 (Oryza sativa), 5'ss of exon 12
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcattcactagtatatcacgattaagtggccagacaaatgatgccactacattcataccattatcattgtttttgtccag---------------------
|||    || ||  |||| || ||| ||||||||||||| || || ||||| ||||| ||||| |||||||| || |||||||||||||| ||||||||||||          || |||  |  ||| |      |   |  | ||        | |  |  |||||| | |||| ||| |  |                     
ATTCAAGGAAATTCAACCACTAATTAGATCAGTTCTTGATGGCTATAATGTTTGTATTTTTGCGTATGGTCAAACTGGATCAGGGAAAACATACACAATGgtatgatgctctcagcataagaatattgatcta--atttatgtcattgagaagtactattgacattattaatgttcttgccatgccatttttacaaatatcttag

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactc----attca------------ctagtatatcacgattaagtggccagacaaatgatgccactacattc---ataccattatcattgtttttgtccag-----------
 ||    || ||| | || || ||| ||||||||||||| || |||||||| || || || |||||||| || || |||||||| ||||| ||||| ||||||| |      |||             | || | |     | |  | ||  | || | |||  | ||||| ||   ||    |||  |   | | | || |            
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgctgaagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcag

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os01g54080.1 (Oryza sativa), 5'ss of exon 14
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcattcactagtatatcacgattaagtggccagacaaatgatgcca-cta-cattcataccattatca-ttgtttttgtccag-------------
 || || |||||  ||||| | ||| ||||||||||||| || | |||||| || || ||||||||||| || || || ||||| ||||| |||||||||||| | | | ||| || || |    | |||    || ||      ||| | ||| ||||      ||| | | |||  | | |                 
TTTCTCCGATATCCAACCTTTGATTAGATCAGTTCTTGATGGATTCAATGTTTGCATTTTTGCATATGGACAAACTGGTTCAGGAAAAACATACACAATGgtatttact-act-gtttaactaattcaagacagcaaacctgctctgctaactatcattggggatattgtaaattgactctcttatcttttaccctttag

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G062034_T01 (Zea mays), 5'ss of exon 5
ATTTTCA--GATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcattcactagtatatcacgattaagtggccagacaaat---gatgccactacatt----cataccattatcattgtttttgtccag-----------
  |||||  |||||    || || ||| ||||||||||||| || |||||||| || || |||||||||||||| || |||||||| |||||  | |||||||||   |   |  || |    |  |||   |    | | |  |   ||| ||  |||  |     |||   |||  ||   || | || |            
--TTTCAACGATATTCGGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTTTGCATTTTTGCATATGGTCAAACTGGATCAGGAAAAACACATACAATGgtatgaagctatcagaaccgaaatatt---tttttaaatatgtttagattcctttacgatggaggatatatttacaataacttgtttcaatgaattgctcag

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G124883_T01 (Zea mays), 5'ss of exon 5
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcattca----ctagtatatcacgatt-aagtggccagacaaatgatgccactacattcataccattatcattgtttttgtccag
||| || |||||  ||||||| ||  ||||||||||||| ||||  ||||| || || ||||| |||||||| || ||||| || || ||||||||||||||||     ||     |   ||| ||   || || | |  | |    |   |  | |||   |      ||  ||||||||||    ||
ATTCTCTGATATCCAACCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGATCCGGAAAGACTTACACAATGgtacgagggcagggcttgaaataacaaagttgaaattgatataagccttgggatattactaactgttgcttgacattgttttttcttag

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G323622_T01 (Zea mays), 5'ss of exon 5
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcattca----ctagtatatcacgattaagtggccagacaaatgatgccactac--attcataccattatcattgtttttgtccag--
||| || |||||  | ||||| ||  ||||||||||||| ||||  ||||| || || ||||| |||||||| || || ||||| || |||||||||||||||      ||      |  |||  | | | || ||   | |    ||  |  | ||   |||  | ||  |  |||||||||| | |    
ATTCTCTGATATCCAGCCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGTTCAGGAAAGACTTACACAATGgtaagacggcagagctcaaaatagaaagttgaattgataatagtcgtggcgatattagtaattggtgcc--tgacattgttttttttcctag

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G173700_T03 (Zea mays), 5'ss of exon 11
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcattcactagtatatcacgattaagtg-----gccagacaaatgatgccact-acattcataccattatcattgtttttgtccag-------
 ||||| || ||| |||| || || ||||||||||| || || | ||| || ||||| ||||||||||| ||||| || || || ||||||||||| |||||||| ||  | ||    || |  |  || ||      | | |  | | ||   ||| |   | ||| |  | |  ||||| || |  |        
TTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTACACTATGgtact-ataaaataaatcataataaaaaattgtcatcactacaatagtaatattactgattatgatatctgttttgttgttattatttaatctttag

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 10
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactca--ttcactagtatatcacgattaagtggccagacaaatgatgccactacattcataccattatcattgtttttgtccag
 | | | || ||| || |  |||| |||||||| ||||| ||||  ||||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||||  ||  || |    |||||  |  | |       ||| ||| ||    |||   |  |||  ||  ||||| ||| |      
GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgtaagcaactttatatatatatatcattcatcattttagataaagga-attactcattctataagat-gtcattatttcttag---

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA05G35130.1 (Glycine max), 5'ss of exon 12
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcattcactagtatatcacgattaagtggccagacaaatgatgccactaca-------ttcataccattat-cattgtttttgtccag
||  || || ||  || |  ||||  |||||||||| || ||||| ||||| ||||| ||||| ||||| || || || |||||||||||||| |||||||||   |  | ||   |||    ||||   |   |  | | || |||  | |  |       ||||| | || |          ||   |||
ATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGGTATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACAATGgtatgaaccctctga-ataaattgattt--ttatctcatacatcatgttattgaaggaattcttcattctataagatgccaacctttctcag

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA07G10190.1 (Glycine max), 5'ss of exon 13
----ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcattcactagtatatcacgattaagtggccagacaaatgatgccactacattcataccattatcattgtttttgtccag
    || || | ||| || |  | |||| |||||||| ||||| || |  ||||||||||| ||||| ||||| ||||| || | ||| ||||||||||||||||||  ||   |||  |||||              || ||| ||  ||    || ||| |   |    || | |           
GTGTATGTTGAAATACAAGA--TTTTATACGATCAGTGCTTGATGGCTTTAATGTATGTATATTTGCTTATGGCCAGACTGgtttaggaaaaacttacacaatggtaagca---actt-tatatt-------------cacacatatattgatttta-atttaattcgccgtcttag-----------

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA08G04580.1 (Glycine max), 5'ss of exon 6
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcattcactagtatatcacgattaagtggccagacaaatgatgccactaca-------ttcataccattat-cattgtttttgtccag
||  || || ||  || |  ||||  |||||||||| || || || ||||| ||||| ||||| ||||| || || || |||||||||||||| || ||||||   |  | ||   ||||   ||||   |   |  | | || |||| | |  |       ||||| | || |         |||   |||
ATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGATATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACGATGgtatgaaccctctga-atatattgattt--ttatctcatacatcatgctattgaaggaattcttcattctataagatgccaacttttctcag

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv17s0000g03700.t01 (Vitis vinifera), 5'ss of exon 13
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcattcactagtatatcacgattaagtggc---cagacaaatgatgccactacattcataccattatcattgtttttg-tccag
 ||||| || |   ||||  |  | ||||| |||||||| || || ||||||||||| ||||| |||||||| || || || || || || ||||||||||||   | |      | | | | |  ||  ||||          ||  |  || || |  | |         ||||| |||  || ||
GTTTTCTGACACTCAACCCTTGGTACGATCTGTTCTTGATGGCTATAATGTATGTATATTTGCTTATGGTCAAACTGGTTCGGGCAAGACATACACAATGgtatgaacttgtatatgtttta-gtctacatggcatatgtgttgatattttcaataaaaacttgtgtaatgtattgtctttcctctag

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcattcactagtatatcacgattaagtggccagacaaatgatgccactacattcataccattatcattgtttttgtccag
|||    ||||   | ||  | || || ||||||||||| || ||||| || ||||| ||||| |||||||| ||||| || || ||||| ||||| |||||| | ||    || ||||  || |     |   ||   |  || ||  ||                                 
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacatattatacaacaacattatttgcaactatttgctgt-acag-------------------------------

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcatt-cactagtatatcacgattaagtggccagacaaatgatgccactacattcataccattatcattgtttttgtccag
|||    ||||   | ||  | || || ||||||||||| || ||||| || ||||| ||||| |||||||| ||||| || || ||||| ||||| |||||| | ||  ||  | ||||  || |     |   ||   |  || ||  ||                                 
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacataattatacaacaacattatttgcaactatttgctgt-acag-------------------------------