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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGCTGAGGCGGAAAAGACAGCACCAGACAATTTCTACTGCAAACGCCTTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAGACAGgtttgaaaaaaagaaatagctttttctccaaagaaccaaaactaaaacctcacttgctgatattgattatgtctttgttcggtttgatgtag

Basic information

species Arabidopsis thaliana
transcript AT1G17290.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G17290.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA16G01630.2 (Glycine max), 5'ss of exon 12
AGCTGCTGAGGCGGAAAAGACAGCACCAGACAATTTCTACTGCAAACGCCTTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAGACAGgtttg-------aaaaaaagaaatagctttttctccaaagaaccaaaactaaaacctcacttgctgatattgattatgtctttgttcggtttgatgtag------------------
|||||| |  |  | ||| |||||||| || |||||||| ||||||||| | || || || || ||| |||| ||||| ||||||||||| ||| |||||||| |       |  ||     | |  ||| | | |  | |   |  |  ||||       || |   |||    ||   |||| |   | | |  |                    
AGCTGCAGGAGATGCAAATACAGCACCTGATAATTTCTATTGCAAACGCTTGCTTAACGCGACAGGAGTAGTTGTTGTTCCTGGTTCTGGTTTTGGACAGgttagtttatgtactaattatgacaaatttatttactgatattgagcaacaaaattga---tgattgcattttccatccttttggtaattataaactgattgtttgtgtcttgcaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152034299|gb|BP824792.2|BP824792
EST:     TTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAGACAG                         GTACCTGGAACATGGGATTT-AGGTGCACTATACTTCCCCAAGAGGATAAG
genomic: TTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAGACAGgtttgaaaaa ... tttgatgtagGTACCTGGAACATGGCATTTCAGGTGCACTATACTTCCCCAAGAGGATAAG
EST: gi|164178246|gb|ES059944.1|ES059944
EST:     TTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAGACAG                         GTACCTGGAACATGGCATTTCAGGTGCAC
genomic: TTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAGACAGgtttgaaaaa ... tttgatgtagGTACCTGGAACATGGCATTTCAGGTGCAC
EST: gi|124963141|gb|EL037497.1|EL037497
EST:     AGTCGTTGTCCCTGGTTCTGGCTTTAGACAG                         GTACCTGGAACATGGCATTTCAGGTGCACTATACTTCCCCAAGAGGATAAG
genomic: AGTCGTTGTCCCTGGTTCTGGCTTTAGACAGgtttgaaaaa ... tttgatgtagGTACCTGGAACATGGCATTTCAGGTGCACTATACTTCCCCAAGAGGATAAG
EST: gi|301502353|gb|HO207893.1|HO207893
EST:     TTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAGACAG                         GTACCTGGAACATGGCATTTCAGGTGCACTATACTTCCCCAAGAGGATAAG
genomic: TTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAGACAGgtttgaaaaa ... tttgatgtagGTACCTGGAACATGGCATTTCAGGTGCACTATACTTCCCCAAGAGGATAAG
EST: gi|125153470|gb|EL184599.1|EL184599
EST:     CCCTGGTTCTGGCTTTAGACAG                         GTACCTGGAACATGGCATTTCAGGTGCACTATACTTCCCCAAGAGGATAAG
genomic: CCCTGGTTCTGGCTTTAGACAGgtttgaaaaa ... tttgatgtagGTACCTGGAACATGGCATTTCAGGTGCACTATACTTCCCCAAGAGGATAAG
EST: gi|125012380|gb|EL084649.1|EL084649
EST:     TTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAGACAG                         GTACCTGGAACAT
genomic: TTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAGACAGgtttgaaaaa ... tttgatgtagGTACCTGGAACAT
EST: gi|301501574|gb|HO207114.1|HO207114
EST:     TTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAGACAG                         GTACCTGGAACATGGCATTTCAAGTGCACTATAACTTCCCCAAAAGGATAA
genomic: TTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAGACAGgtttgaaaaa ... tttgatgtagGTACCTGGAACATGGCATTTCAGGTGCACTATA-CTTCCCCAAGAGGATAA
EST: gi|125079352|gb|EL141390.1|EL141390
EST:     TTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAGACAG                         GTACCTCGGAACA
genomic: TTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAGACAGgtttgaaaaa ... tttgatgtagGTACCT-GGAACA
EST: gi|116442636|gb|EG485228.1|EG485228
EST:     CCCTGGTTCTGGCTTTAGACAG                         GTACCTGGAACATGGCATTTCAGGTGCACTATACTTCCCCAAGAGGATAAG
genomic: CCCTGGTTCTGGCTTTAGACAGgtttgaaaaa ... tttgatgtagGTACCTGGAACATGGCATTTCAGGTGCACTATACTTCCCCAAGAGGATAAG