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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTTCTGAAAGTTGGTGAGGGACCTGTGGCACAGTGCATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGgtaaaccattgaatctattactctgtagcacaatttcttcttgctttctttttctaaccctaagaacggtggtaaaaatgtaacag

Basic information

species Arabidopsis thaliana
transcript AT1G11910.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076971|gb|DR372728.1|DR372728
EST:     ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTG                         GATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
genomic: ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGgtaaaccatt ... aatgtaacagGATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
EST: gi|47832120|gb|CK121804.1|CK121804
EST:     ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTG                         GATCTTGNGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
genomic: ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGgtaaaccatt ... aatgtaacagGATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
EST: gi|116410551|gb|EG453143.1|EG453143
EST:     ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTG                         GATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
genomic: ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGgtaaaccatt ... aatgtaacagGATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
EST: gi|116484531|gb|EG527123.1|EG527123
EST:     ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTG                         GATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
genomic: ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGgtaaaccatt ... aatgtaacagGATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
EST: gi|116456161|gb|EG498753.1|EG498753
EST:     ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTG                         GATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
genomic: ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGgtaaaccatt ... aatgtaacagGATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
EST: gi|116484523|gb|EG527115.1|EG527115
EST:     ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTG                         GATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
genomic: ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGgtaaaccatt ... aatgtaacagGATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
EST: gi|116456160|gb|EG498752.1|EG498752
EST:     ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCCCCTCGTGGACCTCTCTG                         GATCTTGGGAGATGTGTTCATGGGCAAATANNNNNNNGTATTTGACTTTGG
genomic: ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGgtaaaccatt ... aatgtaacagGATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
EST: gi|125040332|gb|EL112601.1|EL112601
EST:     ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTG                         GATCTTGGGAGATGTGTTCATG
genomic: ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGgtaaaccatt ... aatgtaacagGATCTTGGGAGATGTGTTCATG
EST: gi|125312562|gb|EL326647.1|EL326647
EST:     TTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTG                         GATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
genomic: TTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGgtaaaccatt ... aatgtaacagGATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
EST: gi|86075703|gb|DR371460.1|DR371460
EST:     ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTG                         GATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
genomic: ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGgtaaaccatt ... aatgtaacagGATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
EST: gi|125187060|gb|EL202014.1|EL202014
EST:     AGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGCGGACCTCTCTG                         GATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
genomic: AGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGgtaaaccatt ... aatgtaacagGATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
EST: gi|116414786|gb|EG457378.1|EG457378
EST:     ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTG                         GATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
genomic: ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGgtaaaccatt ... aatgtaacagGATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
EST: gi|124721831|gb|EH813233.1|EH813233
EST:     ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTG                         GATCTTGGGAGATGTG
genomic: ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGgtaaaccatt ... aatgtaacagGATCTTGGGAGATGTG
EST: gi|116410552|gb|EG453144.1|EG453144
EST:     ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTG                         GATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG
genomic: ATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGgtaaaccatt ... aatgtaacagGATCTTGGGAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGG