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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATGGTTATCCATGGAGCTCATGTTTCATCTAAGTGTTCTTCCTCTCACTCTCCAGCTTACTAACATAAGTGGCAATCTTTGGGGGAAAACACTTCAAgtaatgactctccctctccctcccatccgggaaaatatgtgttactgtgctgactcatgcattttttgttcatgaccag

Basic information

species Arabidopsis thaliana
transcript AT5G67100.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G67100.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA01G39430.1 (Glycine max), 5'ss of exon 13
TGCATGGTTATCCATGGAGCTCATGTTTCATCTAAGTGTTCTTCCTCTCACTCTCCAGCTTACTAACATAAGTGGCAATCTTTGGGGGAAAACACTTCAAgtaa-------tgactctccctctccctccc-atccggga--aaatatgtgttactgtgctgactcatgcattttttgttcatgaccag----------
||||||| | || ||||| ||||||||| || ||||||||||||| ||||| |  ||||| ||||| |||||||||||||| ||||||||||| ||||| || |       | ||  |  ||  |   |   ||  |  |  | |||||   ||     | ||  | ||||  |  ||||  | |              
TGCATGGCTGTCTATGGAACTCATGTTTTATTTAAGTGTTCTTCCGCTCACACGTCAGCTGACTAATATAAGTGGCAATCTGTGGGGGAAAACTCTTCAGgtgagctcctgtcacatttacttgctagcttgatttgatattagatatgacctaacagccagaggcctgcaactaatgttttttagtttattatttcag

upper sequence: AT5G67100.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv07s0031g00470.t01 (Vitis vinifera), 5'ss of exon 11
TGCATGGTTATCCATGGAGCTCATGTTTCATCTAAGTGTTCTTCCTCTCACTCTCCAGCTTACTAACATAAGTGGCAATCTTTGGGGGAAAACACTTCAAgtaatgactctccctctccctcccatc-cgggaaaatatgtgttactgtgctgactcatg-cattttttgttca--tgaccag---------
|||||||||||||||||| || ||||||||| | |||||||||||||| ||||  |  || ||||| || ||||| ||||| ||||| || || || ||||| |   ||     | |   | |  |   |      ||||| || |||| |     |||| |||     || ||  ||||  |         
TGCATGGTTATCCATGGAACTTATGTTTCATTTGAGTGTTCTTCCTCTTACTCGTCTTCTGACTAATATCAGTGGTAATCTCTGGGGAAAGACTCTCCAAgtgagtgcttcaaatgtggtttctttaatgatttcttatgtatt-ctgtccatgagcatgacatagaaagtacaactgacatgtgttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125081812|gb|EL142894.1|EL142894
EST:     CTAACATAAGTGGCAATCGTTTAGGGGGAAAACACTTCAA                         GGAGCCAGGGCACAGAGAATCGAATACTACTTACTACATACATTCCACTCG
genomic: CTAACATAAGTGGCAATC-TTT-GGGGGAAAACACTTCAAgtaatgactc ... tcatgaccagGGAGCCAGGGCACAGAGAATCGAATACTACTTACTACATACATTCCACTCG