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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTCTTCTTGCCCAAAGTGCAGTTCATGGAGCAATGGCTGGGTACTCAGGTTTCACTGTAGGACCAGTTAACAGTAGACATGCTTACATCCCAATTTCTgtaagcttttctcttttacttctctaatcattcttagactaaaatcattgagtcctaaacctttgtggttaaagttaatcccatgattttttacttctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G61580.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G61580.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA10G33820.1 (Glycine max), 5'ss of exon 13
CACTCTTCTTGCCCAAAGTGCAGTTCATGGAGCAATGGCTGGGTACTCAGGTTTCACTGTAGGACCAGTTAACAGTAGACATGCTTACATCCCAATTTCTgtaagcttttctcttttacttctctaatcattcttagactaaaatcattgagtcctaaacctttgtggttaaagttaatcccatgattttttacttctgcag-------
|||||||||||| ||  |||| ||||||||||| |||||||| ||  | || ||||| || || || || ||||||| ||||||||| ||||||||| | || ||   |||      | |||  || ||||  ||| | | || ||| | |       || ||| | | ||||  | || | | | ||    | ||  | |        
CACTCTTCTTGCACATGGTGCTGTTCATGGAGCTATGGCTGGATATACTGGCTTCACAGTCGGGCCTGTGAACAGTAAACATGCTTATATCCCAATTGCCgtgagtggttc------atttcattactcatgtttatattcaattcaattaaatt---acttttattgctaaaaattatgctacgcttaacaattttagtatttttgtg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124915339|gb|EH989213.1|EH989213
EST:     AACAGTAGACATGCTTACATCCCAATTTCT                         CAGGTGACGGAAGTGACAAATACGGTGAAGTTAACTGATAGGATGTGGGCT
genomic: AACAGTAGACATGCTTACATCCCAATTTCTgtaagctttt ... acttctgcagCAGGTGACGGAAGTGACAAATACGGTGAAGTTAACTGATAGGATGTGGGCT