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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAAAGTCTATCGAGCGGATTATTCTTCCTCGATCTTCTATGGGCGGTTGAGCCAAGAGTTGTTAACTGGAATCTTGTCACCAAGGGTGAATCAGgtccttactctctctaactacactcacaacctcttcactctctttctcttctctgttcaaactgaatttgtttaatcgttattttttcgctatggaaactttgtaacag

Basic information

species Arabidopsis thaliana
transcript AT5G55400.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G55400.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA02G46580.1 (Glycine max), 5'ss of exon 12
GATAAAAGTCTATCGAGCGGATTATTCTTCCTCGATCTTCTATGGGCGGTTGAGCCAAGAGTTGTTAACTGGAATCTTGTCACCAAGGGTGAATCAGgtccttactctctcta-------actacactcacaacctcttcactctctttctcttctctgttcaaactgaatttgtttaatcg--ttattttttcgctatggaaactttgtaacag
|| || ||  | || || ||| | || ||||| || |||||  | || |||||||| || ||||| || ||||| ||||||||||||||||||   |||  | | ||  | ||       | || ||| | |   |||  |   | |      |  ||  |    |      |  | ||| |  ||| ||| | | ||| | |            
GAGAAGAGCTTGTCAAGTGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCTAGGGTTGTCAATTGGAACCTTGTCACCAAGGGTGAAAGTGgta-tgattccttttatagggatattaaactgatactttctataacatgtaataacttgctactttttccatccctcctaaattggcttaatttgttgttattgtag-----------