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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTAGCACTTGCAAATCAAAAGCTACTCGGGATTGCTCCAgtaagtcttttatatcaccgagtctgttaaatcatcatcttctcaatcaacttaatcaagtggtttcataaacatggattttgttcctctttgcctaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G48230.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48230.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G085474_T04 (Zea mays), 5'ss of exon 12
GTTGTAGCACTTGCAAATCAAAAGCTACTCGGGATTGCTCCAgtaagtcttttatatcaccgag--tctgttaaatcatcatcttctcaatcaacttaatcaagtggtttcataaacatggattttgttcctctttgcctaaacag
| ||| |||||||||||||||||||| || |||||| || ||||||||      |   |  |||  |   ||   ||    |   || ||    || ||  | ||  ||     ||  || |  ||| | || ||    |   |  
GCTGTCGCACTTGCAAATCAAAAGCTTCTTGGGATTCCTTCAgtaagtgcccgctgatattgagctttcatttcttctgtgtgaacttaaaagcctaaa--atgtcattctcagaaagtgcaccttgattcttttgtggtgtgc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125098573|gb|EL154673.1|EL154673
EST:     CTCGGGATTGCTCCA                         GAGAAAGTGAACGTAAATGGAGGAGCTGTCTCCTTAGGACACCCTCTAGGC
genomic: CTCGGGATTGCTCCAgtaagtcttt ... gcctaaacagGAGAAAGTGAACGTAAATGGAGGAGCTGTCTCCTTAGGACACCCTCTAGGC
EST: gi|86084667|gb|DR380426.1|DR380426
EST:     GTTGTAGCACTTGCAAATCAAAAGCTACTCGGGATTGCTCCA                         GAGAAAGTGAACGTAAATGGAGGAGCTGTCTCCTTAGGACACCCTCTAGGC
genomic: GTTGTAGCACTTGCAAATCAAAAGCTACTCGGGATTGCTCCAgtaagtcttt ... gcctaaacagGAGAAAGTGAACGTAAATGGAGGAGCTGTCTCCTTAGGACACCCTCTAGGC