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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGGTTGTCAATGGAGGAAGATGTGGAGGAAGTCTCGAATGGGAGTGCAGATGTTTGGGATGAACCACTCGAATCTCCATTTTAGTGACTCGTAAGAGgtactttgttcaacactggtcagcatcatgttccttatgcatgtatgaaatagcaaaattgatgtgctcaatgttacaagtttgtatcttttggtatattaaacgtattaaaagccgttttcgttgctttttttactag

Basic information

species Arabidopsis thaliana
transcript AT5G44090.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G44090.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv07s0005g03730.t01 (Vitis vinifera), 5'ss of exon 13
--GTGAGGTTGTCAATGGAGGAAGATGTGGAGGAAGTCTCGAATGGGAGTGCAGATGTTTGGGATGAACCACTCGAATCTCCATTTTAGTGACTCGTAAGAGgtactttgttcaacactggtcagcatcatgttccttatgcatgtatgaaatag---caaaattgatgtgctcaatgttacaagtttgtatcttttggtatattaaacgtattaaaagccgttttcgttgctttttttactag
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ACATTAGGCTTTCAATGGAAGAAGATGGTGAAGATGTCTCAAATGGAAGTGCAGAAGTTTGGGATGAATCACTTGAAGCTCCATTTT---GAGTTTGATGAGGtgagtt-tactatatgggggggcctcagggagagtaagcataccagagttcctttcaagaacaaagttttccgtttta----tttgaataattgaattggataag------------------------------------