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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTGGAGCCGGTTGAAAATGTTACGTCCAAATTGTTTGTCCAATGCTCACGTCAAAAAGACCTTATAAAGATCTACAGGCACCTACTAAATTACTCAAgtacggtgtgctttcagcttactttactgttatctgtatagaatttttagttcatgtttgtagtcaagactaattaataccaagtctacttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G43745.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43745.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA10G32300.1 (Glycine max), 5'ss of exon 12
AAAGTGGAGCCGGTTGAAAATGTTACGTCCAAATTGTTTGTCCAATGCTCACGTCAAAAAGACCTTATAAAGATCTACAGGCACCTACTAAATTACTCAAgtacggtgtgctttcagcttactttac---tgttatctgtatagaatttttagttcatgtttgtagtcaagactaattaataccaagtc-tacttgttgcag
||||| ||||| || ||||||||  | |||||| | ||||| |||||||| || || || |  ||||||||||||||||||||| | ||||||||   |||||| |  |   | |    ||| || |   | |    ||| |  |    ||| ||||| ||| |  | || | | | ||||   |  |  || |||||  | 
AAAGTAGAGCCAGTAGAAAATGTGGCATCCAAACTATTTGTTCAATGCTCTCGGCAGAAGGGACTTATAAAGATCTACAGGCACTTGCTAAATTATCGAAgtactgcatttatgctctctacatttcatatatgccatgtttgtatggattacttcatatttct--taaatattcaataatggtattttatatttgttttat

upper sequence: AT5G43745.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA20G35310.1 (Glycine max), 5'ss of exon 12
AAAGTGGAGCCGGTTGAAAATGTTACGTCCAAATTGTTTGTCCAATGCTCACGTCAAAAAGACCTTATAAAGATCTACAGGCACCTACTAAATTACTCAAgtacggtgtgctttcagcttactttac---tgttatctgtatagaatttttagttcatgtttgtagtcaagactaattaataccaagtc-tacttgttgcag
||||| ||||| || ||||||||| | || ||| | ||||| |||||||| || || || |  ||||||||||||||||||||| | ||||||||   |||||| |  |   |      ||| || |   | |    ||| |  |    ||| ||| | ||| |  | || | |   ||||   |  |  || || || || 
AAAGTAGAGCCAGTAGAAAATGTTGCATCGAAACTATTTGTTCAATGCTCTCGGCAGAAGGGACTTATAAAGATCTACAGGCACTTGCTAAATTATCGAAgtactgcatctatgttctctacatttcatatatgccatgtttgcatggattacttcctatttct--taaatattctgtaatggtattttatatttatttcat