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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTGATCCAGCAATAAGAACTCACACTGCCTTCTTTAGCGTCTGGAAACGATATGGTTTCACCCCTGAGGGTTTTAATCTTGCTACACTTAGTGTCCAGgtactctatcttaattttaagtgtctctgtgatcacttgtcacttattacgtctgatggcactatgatgttacagcttcatatctattcttcattttccttacag

Basic information

species Arabidopsis thaliana
transcript AT5G43710.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: LOC_Os01g56670.3 (Oryza sativa), 5'ss of exon 12
CGTTGATCCAGCAATAAGAACTCACACTGCCTTCTTTAGCGTCTGGAAACGATATGGTTTCACCCCTGAGGGTTTTAATCTTGCTACACTTAGTGTCCAGgtactctatcttaattttaagtgtctctgtgatcacttgtcacttattacgtctgatggcactatgatgttacagcttcatatctattcttcattttccttacag
 |||||||| || ||  |||||||  |||||||||| || || ||||||  |||||| |||||||| || || |||||||||||||||   | ||| |||||| |  |  ||    | ||    || || |     |  |    ||| |    |||      ||||   | |    ||   |     | |  |        |   
TGTTGATCCTGCCATTCGAACTCATGCTGCCTTCTTCAGTGTATGGAAAAAATATGGCTTCACCCCAGAAGGGTTTAATCTTGCTACATCCACTGTTCAGgtagttaactttttactaaaaaaactttgggtaggatcat----tataagcagtgagcctcatatggaatcattctttttcaagagatttgaaacagaacgatg-

upper sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G173868_T02 (Zea mays), 5'ss of exon 11
-------------------------------------------------CGTTGATCCAGCAATAAGAACTCACACTGCCTTCTTTAGCGTCTGGAAACGATATGGTTTCACCCCTGAGGGTTTTAATCTTGCTACACTTAGTGTCCAGgtactctatcttaattttaagtgtctctgtgatcacttgtcacttattacgtctgatggcactatgatgttacagcttcatatctattcttcattttccttacag
                                                  |||||||| || ||  | || ||  |||||||||| ||||||||||||   |||||||| |||||||| ||||||||||||||||||   | ||| |||||| |  | ||    || || | |    || |  | |  |  | || | |  ||                                                   
ATTCTAGATGATTGCTTATGCTGCTTAGATTTAAGGTTTTAGCTGGAGATGTTGATCCTGCTATTCGCACACATGCTGCCTTCTTCAGCGTCTGGAAAAAgtatggttttacccctgaaggttttaatcttgctacatccactgtacaggtaatgaaactg---ttaaactataatagtcaagagtattagcataat-ctccta--------------------------------------------------

upper sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G173868_T04 (Zea mays), 5'ss of exon 12
CGTTGATCCAGCAATAAGAACTCACACTGCCTTCTTTAGCGTCTGGAAACGATATGGTTTCACCCCTGAGGGTTTTAATCTTGCTACACTTAGTGTCCAGgtactctatctt---aattttaagtgtctctgtgatcacttgtcacttattacgtctgatggcactatgatgttacagcttcatatctattcttcattttccttacag
 |||||||| || ||  | || ||  |||||||||| ||||||||||||   |||||||| |||||||| ||||||||||||||||||   | ||| |||||| |  | ||    || | |||  |||      || |    | |  |  ||  |  | |    |  |    |  ||   ||      |      |||||        
TGTTGATCCTGCTATTCGCACACATGCTGCCTTCTTCAGCGTCTGGAAAAAGTATGGTTTTACCCCTGAAGGTTTTAATCTTGCTACATCCACTGTACAGgtaatgaaactgttaaactataatagtcaagagtattagc-ataatctcctatctaaggtttgccatttgcctctcattatccctaacaaaaacaattttt-------

upper sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 11
CGTTGATCCAGCAATAAGAACTCACACTGCCTTCTTTAGCGTCTGGAAACGATATGGTTTCACCCCTGAGGGTTTTAATCTTGCTACACTTAGTGTCCAGgtactctatcttaattttaagtgtctctgtgatcacttgtcacttattacgtctgatggcactatgatgttacagcttcatatctattcttcat-tttccttacag---
  |  |||| |||||  | || ||  |||||||||| || ||||||| | |||||||||| || |||||||| |||||||||||||  || ||||| ||||||   |    || |  |||    ||  | |   |  |  |  |||  |||     |     ||      | |||| |  | ||||||  |    |||      ||   
TATCAATCCCGCAATTCGCACCCATGCTGCCTTCTTGAGTGTCTGGAGAAGATATGGTTTTACTCCTGAGGGCTTTAATCTTGCTAGTCTCAGTGTTCAGgtataat----tagtcctaaa-acctgggggccaatatagctgttaaaacgatgcttaattatac----cttcagccttctttctattagttgcattttagggtagggt

upper sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA20G35290.1 (Glycine max), 5'ss of exon 7
CGTTGATCCAGCAATAAGAACTCACACTGCCTTCTTTAGCGTCTGGAAACGATATGGTTTCACCCCTGAGGGTTTTAATCTTGCTACACTTAGTGTCCAGgtactctatcttaattttaagtgtctctgtgatcacttgtcacttattacgtctgatggcactatgatgttacagcttcatatctattcttcattttccttacag----
  |  |||| |||||  | |||||  |||||||||| || ||||||| | |||||||||| ||||||||| | |||||||||||||  || ||||| ||||||   |    || |  |||   |  ||| |  |   | |  ||  | |           | |||   | | |||| |  ||||||||       ||      ||    
TATCAATCCTGCAATTCGCACTCATGCTGCCTTCTTGAGTGTCTGGAGAAGATATGGTTTTACCCCTGAGAGCTTTAATCTTGCTAGTCTCAGTGTTCAGgtataat----tagtcctaa---tacctggggcccaatatagctgttaaaacaatgcttaattata--gcttcagccttctatctattaagtgcatttagggtagcata

upper sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 13
CGTTGATCCAGCAATAAGAACTCACACTGCCTTCTTTAGCGTCTGGAAACGATATGGTTTCACCCCTGAGGGTTTTAATCTTGCTACACTTAGTGTCCAGgtactctatcttaattttaagtgtctctgtgatcacttgtcact--tattacgtctgatggcactatgatgttacagcttcatatctattcttcattttccttacag
| |||| || || ||  |||| || |||||||| ||||| || |||||| ||||||| |||||||| ||||||||||||||||| ||| | ||||| ||||||     ||| || |   | | |||      | |      |||  | ||   ||| ||   | | | |  ||   | |||||           ||  |  | |   
CATTGACCCTGCTATTCGAACGCATACTGCCTTTTTTAGTGTTTGGAAAAGATATGGCTTCACCCCAGAGGGTTTTAATCTTGCCACATTAAGTGTTCAGgta-----tctgaactgccattatctgaaaactgatgcaatactgttgttgattcttatta-atttttacctttgggtttcatgcaagaagcatataatattcaag-