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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTCAAATCCGGTTAGCTCTTATTGATTTTCTGAAAGGACTTATGGAATTTGATCCAGCAAAACGTTGGTCACCTTTTCAGgtattgaacttccttgcttaagttatctatatatttgattttgaaggcttctgttttttgctagccataatggattaacatcaacttttcatgttttaag

Basic information

species Arabidopsis thaliana
transcript AT5G35980.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G35980.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA16G18110.1 (Glycine max), 5'ss of exon 14
AAACTCAAATCCGGTTAGCTCTTATTGATTTTCTGAAAGGACTTATGGAATTTGATCCAGCAAAACGTTGGTCACCTTTTCAGgtattgaact-----tccttgcttaagtt-----atctatatatttgattttga---aggcttctgttttttgctagccataatggattaacatcaacttttcatgttttaag-
||| |||||| ||  | |||||||| |||||||||||||| ||| | ||||||||||| |||||||| |||||||| ||||||||| |  |||     |  |||   |  ||     |||| |  |  | | ||||     |  |  ||     |   |||  ||||   |||| ||     |||  | | ||    
AAAGTCAAATACGACTGGCTCTTATAGATTTTCTGAAAGGGCTTGTTGAATTTGATCCTGCAAAACGCTGGTCACCCTTTCAGgtaattgactttgtcttattgtccacattggcgcatctttcaaactaaatttggcttggtttaatgcaaaatttaagctgtaattacttaaaatggtagtttggtttcttgcag

upper sequence: AT5G35980.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv16s0039g00610.t01 (Vitis vinifera), 5'ss of exon 11
AAACTCAAATCCGGTTAGCTCTTATTGATTTTCTGAAAGGACTTATGGAATTTGATCCAGCAAAACGTTGGTCACCTTTTCAGgtattgaacttccttgcttaagttatctatatatt-tgattttgaaggcttctgttttttgctagccataatggatt----aacatcaacttttcatgttttaag-------------
||| || | | ||||| || || ||||||||  |||  |||||  | ||||||||||| ||||| || |||||||||||||||||     | |  |||  | |   ||||   || || |||| ||| |   |  | | |  |||||  ||  ||  |||        |  |   ||   |||| ||              
AAAGTCGAGTTCGGTTGGCACTGATTGATTTCTTGAGGGGACTGGTTGAATTTGATCCTGCAAAGCGGTGGTCACCTTTTCAGgtt----attgtctttatcacagtatcagcattttatgatcttggaacttgatttctgctgctatgcaatatatatttcaggctgtggatagttagagtttgaactcctattctgcag