Sequence
atgc intronic sequence ATGC exonic sequenceGGTTGTGTGTTTCATAGTTGTGGCAATTCTTGTGGCATTGGTGGCTTCAAGTCCAACAGGAGGATGGAGTGGTAGGAGTTTAAGTTTACTTGATCCgtgagtggttctagtttttcaatctttcttctcctagccatttattttatgtctttgtccacgtttcaggtattccgctttatcattttataattattaacatacctgacactctttttctttgttttatctatcgtacaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G19690.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 12
GGTTGTGTGTTTCATAGTTGTGGCAATTCTTGTGGCATTGGTGGCTTCAAGTCCAACAGGAGGATGGAGTGGTAGGAGTTTAAGTTTACTTGATCCgtgagtggttctagtttttcaatctttcttctcctagccatttattttatgtctttgtccacgtttcaggtattccgctttatcattttataattattaacatacctgacactctttttctttgttttatctatcgtacaacag
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TGCAGTGTGTTGTGCAATGGTGGCAGTACTTGTAGCATTGGTAGCTTCAAGCCCAACAAAAGGATGGAGTGGAAGAAGTTTAAGTCTGCTTGATCCgtaagtg---ttgtgttttcaatatttatcattcaaatt-cttaaaaaagatgttaaaataaatttt---tcacctaaaatgatattctgtgattaaggtgattgtt-------------------------------------
upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 12
GGTTGTGTGTTTCATAGTTGTGGCAATTCTTGTGGCATTGGTGGCTTCAAGTCCAACAGGAGGATGGAGTGGTAGGAGTTTAAGTTTACTTGATCCgtgagtggttctagtttttcaatctttcttctcctagccatttattttatgtctttgtccacgtttcaggtattccgcttta--tcattttataattattaacatacctgacactctttttctttgttttatctatcgtacaacag
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GGCAGTGTGTTGCGCAATGGTGGCAGTACTTATAGCATTGGTAGCTTCAAGCCCAACAAAAGGATGGAGTGGAAGAAGTTTAAGTCTGCTTGATCCgtaagtgttttg---tttgcaatattatttaccattcaaattc---ttaaaaaaatgttgaaat---aatttttccacctaaaatgatattcta-tgattaaggtgattg------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164109974|gb|EL976133.1|EL976133EST: GTTTACTTGATCC AACTTATGCAAGCAAGTATATTCCAATTATTGCAAGTGTCAGTGAACATCA
genomic: GTTTACTTGATCCgtgagtggtt ... cgtacaacagAACTTATGCAAGCAAGTATATTCCAATTATTGCAAGTGTCAGTGAACATCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTGTGTGTTTCATAGTTGTGGCAATTCTTGTGGCATTGGTGGCTTCAAGTCCAACAGGAGGATGGAGTGGTAGGAGTTTAAGTTTACTTGATCCgtgagtggttctagtttttcaatctttcttctcctagccatttattttatgtctttgtccacgtttcaggtattccgctttatcattttataattattaacatacctgacactctttttctttgttttatctatcgtacaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA