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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAGGACTAACTCCAGAAGAAGTCATATCTAAGATCATGGAGAACCCTGATGTTGCCATGGCATTCCAGAATCCTAGAGTCCAAGCAGCGTTAATGGAAgtacgttttcttttaacctgaataagagaattgcttaattttaccccacttctttcttcatacaaaacagaaaccaattacattcttgttgttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G16620.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16620.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA18G05480.1 (Glycine max), 5'ss of exon 15
AATAGGACTAACTCCAGAAGAAGTCATATCTAAGATCATGGAGAACCCTGATGTTGCCATGGCATTCCAGAATCCTAGAGTCCAAGCAGCGTTAATGGAAgtacgttttcttttaacctgaataagagaattgcttaattttaccccacttc--tttcttcatacaaaacagaaaccaattacattcttgttgttgttgcag
||| || ||  |||||||||||||||| || ||||| ||||  || ||||| ||||| |||||||| || ||||||||||| ||||||||  | ||||| ||| ||| |  ||||||     ||   |  || | ||     || |  ||    |||| ||        | | |                            
AATTGGGCTTTCTCCAGAAGAAGTCATTTCAAAGATTATGGCCAATCCTGAGGTTGCAATGGCATTTCAAAATCCTAGAGTTCAAGCAGCTATCATGGATgtatgttctaatttaactactttattggtcttacatatcaaaactctgctctgatttcgtctcttgtggctgcag---------------------------

upper sequence: AT5G16620.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA11G31810.1 (Glycine max), 5'ss of exon 12
AATAGGACTAACTCCAGAAGAAGTCATATCTAAGATCATGGAGAACCCTGATGTTGCCATGGCATTCCAGAATCCTAGAGTCCAAGCAGCGTTAATGGAAgtacgttttcttttaacctgaataagagaattgcttaattttaccccacttctttcttcatacaaaacagaaaccaattacattcttgttgttgttgcag
||| || ||  |||| ||||||||||| || ||||| ||||  || ||||| ||||| |||||||| || ||||||||||| ||||||||  | ||||| ||| |||    ||              ||| | ||| |||          |||||| | ||  |||          ||| |||   |  ||| |||||||
AATTGGGCTTTCTCCCGAAGAAGTCATTTCAAAGATTATGGCCAATCCTGAAGTTGCAATGGCATTTCAAAATCCTAGAGTTCAAGCAGCTATCATGGATgtatgttccaatt--------------gaaatacttcattgg--------tctttcat-atgaaaactctggtatgatttcatctct--tgtggttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124982163|gb|EL054988.1|EL054988
EST:     GCCATGGCATTCCAGAATCCTAGAGTCCAAGCAGCGTTAATGGAA                         TGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAAAGAGGTA
genomic: GCCATGGCATTCCAGAATCCTAGAGTCCAAGCAGCGTTAATGGAAgtacgttttc ... gttgttgcagTGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAAAGAGGTA
EST: gi|86086248|gb|DR382007.1|DR382007
EST:     ATGTTGCCATGGCATTCCAGAATCCTAGAGTCCAAGCAGCGTTAATGGAA                         TGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAAAGAG
genomic: ATGTTGCCATGGCATTCCAGAATCCTAGAGTCCAAGCAGCGTTAATGGAAgtacgttttc ... gttgttgcagTGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAAAGAG