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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCAGTTCCCTTTGGCAAAATGATAGTTCTTGACCTATATGCTGAAGTCAAACCGATATGGAACAAGTCCGCCCAATTTTATGGAACTCCTTATATCTGgtatattgttgtctcagtttccttcttatgcctgagtcagttgtatttttacgtgtttttattataatcggatgaattccag

Basic information

species Arabidopsis thaliana
transcript AT5G13690.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13690.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA10G11720.2 (Glycine max), 5'ss of exon 12
ATTCAGTTCCCTTTGGCAAAATGATAGTTCTTGACCTATATGCTGAAGTCAAACCGATATGGAACAAGTCCGCCCAATTTTATGGAACTCCTTATATCTGgta--tattgttgtctcag-tttccttcttatgcctgagtcag-----ttgtatttttacgtgtt-tttattat-aatcggatgaattccag
|||| ||||| ||||| || ||||| |||||||| |||| |||||| || ||||| |||||||| || |||   || |||||||| |||||||||||||||||  ||    | | | || | |  ||  ||      |   ||        |||| | | |  || |  ||| | ||||  |     | |||
ATTCTGTTCCATTTGGGAAGATGATTGTTCTTGATCTATTTGCTGATGTAAAACCAATATGGAAAAATTCCTTTCAGTTTTATGGTACTCCTTATATCTGgtaattaacactttgttagctcttgttactaaattctataaagaaatacaatattctaaagaattatgcattctcaatcttacttgcttcag

upper sequence: AT5G13690.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv13s0064g00370.t01 (Vitis vinifera), 5'ss of exon 12
ATTCAGTTCCCTTTGGCAAAATGATAGTTCTTGACCTATATGCTGAAGTCAAACCGATATGGAACAAGTCCGCCCAATTTTATGGAACTCCTTATATCTGgtatattgttgtctca--------gtttccttcttatgcct-gagtcag---ttgtatttttacgtgt--ttttattataatcggatgaattccag------------------------------------------------------------------------
|||| ||||| ||||| |||||| |||||||||| |||| |||||| | |||||| || ||||  |  ||| | ||||||||||| ||||| |||||||||||    | | | |||        | | |  | | || ||| |||  ||   ||  || || | | |   |||| |  |||||        |  |                                                                         
ATTCTGTTCCATTTGGGAAAATGGTAGTTCTTGATCTATTTGCTGATGCCAAACCAATCTGGAGAACATCCTCTCAATTTTATGGCACTCCCTATATCTGgtaaccagctctttcaaagaagtagctactatttcataccttgagatagagttttcatgttcaagagaaattttctcttaatcttgcattatttatcttcttttcttttttagtctgggtttatctgtaacaaatatgcttaccatgtcaatttttgttacaaatcag