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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGATCTTCAAACCTGAGAGGAGACTGGAAAAGAAGGTTTTTTGTTCTTGACAGCCGGGGAATGCTCTATTATTACCGAAAACAGTGTAGCAAACCATCTgtgagttttggttttatatttatcttttatttgaaaacagcagaattatgcaaacggtatggtgttcataaagtaaaaatctatttgacccattcttttcacactctgacttagattatttgatgtttag

Basic information

species Arabidopsis thaliana
transcript AT5G13300.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 5'ss of exon 12
ACGATCTTCAAACCTGAGAGGAGACTGGAAAAGAAGGTTTTTTGTTCTTGACAGCCGGGGAATGCTCTATTATTACCGAAAACAGTGTAGCAAACCATCTgtgagttttggttttatatttatcttttatttgaaaacagcagaattatgcaaacggtatggtgttcataaagtaaaaatctatttgacccattcttttcacactctgacttagattatttgatgtttag
 |||||||||||| ||||||| ||||||||||||||||| ||||||||||| ||||| |||||| | |||||||| || || |||  ||| | |||||||||  ||  |   |          |   |   | |||  |    |||  |  |   |   || | ||  |    || |    | ||| |    |||   ||| | | |   || | || |||  |   |||
GCGATCTTCAAACTTGAGAGGTGACTGGAAAAGAAGGTTCTTTGTTCTTGATAGCCGAGGAATGTTATATTATTATCGCAAGCAGAATAGTAGACCATCTgtaggtcctcact----------cccctgaataaaattattcaaatacttaatttgacttgatattttt----tacatgcttgtttcat---ttcagctcataatgt--tttcgtttttttacttcgtag

upper sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: LOC_Os08g42530.1 (Oryza sativa), 5'ss of exon 12
ACGATCTTCAAACCTGAGAGGAGACTGGAAAAGAAGGTTTTTTGTTCTTGACAGCCGGGGAATGCTCTATTATTACCGAAAACAGTGTAGCAAACCATCTgtgagttttggttttatatttatcttttatttg-aaaacagcagaattatg--caaacggtatggtgttcataaagtaaaaatctatttgacccattcttttcacactctgacttagattatttgatgtttag
| ||||||||||| ||||||  || |||||||||||||||||||| ||||| || || |||||||| || || || || || ||   ||  |   || ||||  ||       ||  | |  |    || |     | | |||| ||| ||  |||   |||   | | | |||  |     | |  || |  | ||  ||||||  |  | |||  |               
AAGATCTTCAAACTTGAGAGCTGATTGGAAAAGAAGGTTTTTTGTCCTTGATAGTCGAGGAATGCTGTACTACTATCGCAAGCAAATTAATAGGACACCTgtaggtccc--ccttgcactagtgaaatactcatgcagctgcaggattctgtccaagatgtacaatatacttaagttcc---tgtcctttattc-tttgtttcacttttggtcttccag--------------

upper sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM5G872204_T01 (Zea mays), 5'ss of exon 9
ACGATCTTCAAACCTGAGAGGAGACTGGAAAAGAAGGTTTTTTGTTCTTGACAGCCGGGGAATGCTCTATTATTACCGAAAACAGTGTAGCAAACCATCTgtgagttttggttttatatttatcttttatttgaaaacagcagaattatgcaaacggtatggtgttcataaagta----aaaatctatttgacccattcttttca-cactctgacttagattatttgatgtttag
| ||||||||||| ||||||  ||||||||||||||||| || || ||||| || || |||||||| || || || ||||||||   ||     ||| ||||  || |  | | ||     || | || ||  ||  |     || |  ||| |   | | || | ||  | | |    | | | || || |   ||| |  ||| |  | || ||| ||| || |         
AAGATCTTCAAACTTGAGAGCCGACTGGAAAAGAAGGTTCTTCGTACTTGATAGTCGAGGAATGCTGTACTACTATCGAAAACAAATTACTCGGCCACCTgtaggtctccgatgtaa---catttgttgttgaaatgctcattaagttggcataatattttgt-tccacgatgcatgatatattttaattcagatattttcctcaaccatttgcctttgatcatatag-------

upper sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G059225_T02 (Zea mays), 5'ss of exon 12
ACGATCTTCAAACCTGAGAGGAGACTGGAAAAGAAGGTTTTTTGTTCTTGACAGCCGGGGAATGCTCTATTATTACCGAAAACAGTGTAGCAAACCATCTgtgagttttggttttatatttatcttttatttgaaaacagcagaattatgcaaacggtatggtgttcataaagtaaaaatctatttgacccattcttttcacactctgacttagattatttgatgtttag
  ||||||||||| ||||||| || |||||||| ||||| ||||| || ||||| || |||||| | || ||||| || || |||   || | ||||||||| ||  ||        | ||  |  | | | ||    |      || | || ||  |    || |  |  ||| || || ||| | | | ||| || || ||     | || |||| |           
GAGATCTTCAAACTTGAGAGGTGATTGGAAAAGGAGGTTCTTTGTCCTCGACAGTCGAGGAATGTTGTACTATTATCGCAAGCAGAACAGTAGACCATCTgtaagcattcacacagcacttcacaat-actcgacctgaattttttttt-cacacacttaattggtgtttcagttaatat-tatctcatc-atttttgtccca-----attttgattttccag-------

upper sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 12
ACGATCTTCAAACCTGAGAGGAGACTGGAAAAGAAGGTTTTTTGTTCTTGACAGCCGGGGAATGCTCTATTATTACCGAAAACAGTGTAGCAAACCATCTgtgagttttggttttatatttatcttttatttgaaaacagcagaattatgcaaacggtatggtgttcataaagtaaaaatctatttgacc-cattcttttcacactctgacttagattatttgatgtttag
 || || || ||| | || || ||||||||||| || |||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||| ||||||| ||      | | | |  ||  ||   |||  |   |    || || ||  ||  ||   |  |       | | ||   |||| ||| |||| || |     | |  | |   |              
GCGTTCCTCTAACTTAAGGGGGGACTGGAAAAGGAGATTTTTTGTTCTTGATAGTCGGGGAATGCTGTATTACTACCGTAAACAGTGCAGCAAATCATCTgtaag----aatgtgaaaaataagttggtttttgagggacttaaactaagcctac--taaaataattgcttctttataacaaatttcacctcatttttgtggttatttatcatgtgtag------------

upper sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 12
ACGATCTTCAAACCTGAGAGGAGACTGGAAAAGAAGGTTTTTTGTTCTTGACAGCCGGGGAATGCTCTATTATTACCGAAAACAGTGTAGCAAACCATCTgtgagttttggttttatatttatcttttatttgaaaacagcagaatt-atgcaaacggtatggt-gttcataaagtaaaaatctatttgacccattcttttcacactctgacttagattatttgatgtttag
 || || |||||| | || || ||||||||||| || |||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||| ||||||| ||   || |  | ||   |    ||   |    | | || | || |    |    | ||||  || || | ||  |                                                     
GCGTTCCTCAAACTTAAGGGGGGACTGGAAAAGGAGATTTTTTGTTCTTGATAGTCGGGGAATGCTGTATTACTACCGTAAACAGTGCAGCAAATCATCTgtaagaagtg-tactgtaaaaaataattgcatctttataacaaatttcacctcatttttgtggttatttatcatgtgtag----------------------------------------------------

upper sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 12
ACGATCTTCAAACCTGAGAGGAGACTGGAAAAGAAGGTTTTTTGTTCTTGACAGCCGGGGAATGCTCTATTATTACCGAAAACAGTGTAGCAAACCATCTgtgagttttggttttatatttatcttttatttgaaaacagcagaattatgcaaacggtatggtgttcataaagtaaaaatctatttgacccattcttttcacactctgacttagattatttgatgtttag
||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| || || ||||||   ||||||||||||||||||      ||||| |  |   |  |||  || |  |  |  || || |  |   ||  || || | | |||  | |||   |     || ||| |||     |||  |   |||| |         
ACGCTCCTCAAACCTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTATATTACTATCGCAAACAGAACAGCAAACCATCTgtgagt----aatttatttggaaaataaattgcaacatggagg--ttttgaagtc--cattctggtcttgaggtatgattctgcct--tttatacttatcat----tgagcttttttatgtag-------

upper sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: EFJ08060 (Selaginella moellendorffii), 5'ss of exon 12
ACGATCTTCAAACCTGAGAGGAGACTGGAAAAGAAGGTTTTTTGTTCTTGACAGCCGGGGAATGCTCTATTATTACCGAAAACAGTGTAGCAAACCATCTgtgagttttggttttatatttatcttttatttgaaaacagcagaattatgcaaacggtatggtgttcataaagtaaaaatctatttgacccattcttttcacactctgacttagattatttgatgtttag
 || ||||||||  || | ||||||||||||||  | || |||||||| || ||||| |||||||| || |||||||| ||||| ||  |||| ||  |||| ||   |  |  | ||    ||||||  || | | ||  |    ||  |  ||    |   || ||                                                              
GCGTTCTTCAAATTTGCGTGGAGACTGGAAAAGGCGTTTCTTTGTTCTGGATAGCCGTGGAATGCTGTACTATTACCGTAAACAATGGGGCAAGCCCACTgtaagaacttctaatgtaggattcttttggttcata-catgaagcgtaacctgacatcttttcgtgcag-------------------------------------------------------------

upper sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: EFJ24732 (Selaginella moellendorffii), 5'ss of exon 12
ACGATCTTCAAACCTGAGAGGAGACTGGAAAAGAAGGTTTTTTGTTCTTGACAGCCGGGGAATGCTCTATTATTACCGAAAACAGTGTAGCAAACCATCTgtgagttttggttttatatttatcttttatttgaaaacagcagaattatgcaaacggtatggtgttcataaagtaaaaatctatttgacccattcttttcacactctgacttagattatttgatgtttag
               | | ||||||||||||||  | || |||||||| || ||||| |||||||| || |||||||| ||||| ||  |||| ||  |||| ||   |  |  | ||    ||||||  || | | ||  |    ||  |  ||    |   || ||                                                              
---------------GCGTGGAGACTGGAAAAGGCGTTTCTTTGTTCTGGATAGCCGTGGAATGCTGTACTATTACCGTAAACAATGGGGCAAGCCCACTGTAAGAACTTCTAATgtaggattcttttggttcata-catgaagcgtaacctgacatcttttcgtgcag-------------------------------------------------------------