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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCTGATGAAGAGTTTGAGGAATACCTTAGGCATCTTATCAGCGACCAGTGCACAGGTGACAGGAATGAGgtgagttcggtcttgagcataatagtttttatagatcttcagacaagataagctaaaactatataatttctgtatatatgtggggccaacttcatgcttatgatttgcgtaatatccagaaggttcctcaccaagttggttgcttttctcatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G03430.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03430.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: LOC_Os01g15490.3 (Oryza sativa), 5'ss of exon 11
GCACCTGATGAAGAGTTTGAGGAATACCTTAGGCATCTTATCAGCGACCAGTGCACAGGTGACAGGAATGAGgtgagttcggtcttgagcataatagtttttatagatcttcagacaagataagctaaaactatataatttctgtatatatgtggggccaacttcatgcttatgatttgcgtaatatccagaaggttcctcaccaagttggttgcttttctcatttcag
|| ||||||||||||||||| ||||||||||| || || ||  | ||| | | ||| |||||  | |||||||| |  | | ||   |  | |||        || ||  |   | |       |||   || |  |  ||   | ||    | | || | || ||   |||| ||||       |  |   |  |   |||                           
GCTCCTGATGAAGAGTTTGAAGAATACCTTAGTCAACTGATAGGAGACAATTACACTGGTGATCGAAATGAGgtaatctggttcgcaaatacaat--------taaattcttgaatat------ctagtgctgtgcatgtttattcta-gcatagtgcaagctgcagtattatcattta------actccacatctctttcag--------------------------

upper sequence: AT5G03430.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv08s0007g04980.t01 (Vitis vinifera), 5'ss of exon 12
GCACCTGATGAAGAGTTTGAGGAATACCTTAGGCATCTTATCAGCGACCAGTGCACAGGTGACAGGAATGAGgtgagttcggtcttgagcataatagtttttatagatcttcagacaagataagctaaaactatataatttctgtatatatgtggggccaacttcatgcttatgatttgcgtaatatccagaaggttcctcaccaagttggttgcttttctcatttcag
|| ||||||||||| ||||| ||||| ||||||||||||||  | ||||| ||||| |||||| |||||||||| | || | |||   | | |  |  | |||| | | ||   ||   ||    || ||    |    |    ||||  | |   ||  |    ||  ||| |                                                       
GCCCCTGATGAAGAATTTGAAGAATATCTTAGGCATCTTATAGGTGACCATTGCACTGGTGACCGGAATGAGgtaa-tttgttctcatgga-accacatcttattgttatttttactgcatccattataatgcaagggataacttataattatcttgctgaaacaatctttaag-------------------------------------------------------