1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGATCAGCCAAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCTGCTCTCTTAAAGgtagacacacacacacacactagattaatgtaaagttgaaagtagaaatcttgagaaagtctattgagcggcattaagagtagagttcttacacgagatttgacttgtag
species | Arabidopsis thaliana |
transcript | AT4G39460.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCTGCTCTCTTAAAG GGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGATCAATCTTCTTTEST: gi|125085138|gb|EL145089.1|EL145089
genomic: ACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCTGCTCTCTTAAAGgtagacacac ... tgacttgtagGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGATCAATCTTCTTT
EST: ACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCTGCTCTCTTAAAG GGTATTGGGCCAAGAGTGTTGTGGEST: gi|124721060|gb|EH812462.1|EH812462
genomic: ACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCTGCTCTCTTAAAGgtagacacac ... tgacttgtagGGTATTGGGCCAAGAGTGTTGTGG
EST: CTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCTGCTCTACTTAAAG GGTATTGGGCCAAGAGTGTTGTGGATAEST: gi|125313720|gb|EL327805.1|EL327805
genomic: CTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCTGCTCT-CTTAAAGgtagacacac ... tgacttgtagGGTATTGGGCCAAGAGTGTTGTGGATA
EST: ACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCTGCTCTCTTAAAG GGTATTGGGCCAAGAGTGEST: gi|124957192|gb|EL032052.1|EL032052
genomic: ACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCTGCTCTCTTAAAGgtagacacac ... tgacttgtagGGTATTGGGCCAAGAGTG
EST: AGAGGAAGGAGCTCCTGCTCTCTTAAAG GGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGATCAATCTTCTTT
genomic: AGAGGAAGGAGCTCCTGCTCTCTTAAAGgtagacacac ... tgacttgtagGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGATCAATCTTCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCAGCCAAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCTGCTCTCTTAAAGgtagacacacacacacacactagattaatgtaaagttgaaagtagaaatcttgagaaagtctattgagcggcattaagagtagagttcttacacgagatttgacttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT