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ATATCACGCATCCCACACCAGATCTGACAGGATACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAGgtacactctttcagaagatagttggttcaaagttcttatcataatcgatgttattacaacgtgaaaaattaacctgtatgagaaacctatatacctagta...
species | Arabidopsis thaliana |
transcript | AT4G38510.5 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAG ATCTACCCTCCGATCAAEST: gi|116450403|gb|EG492995.1|EG492995
genomic: ACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAGgtacactctt ... tgtttcacagATCTACCCTCCGATCAA
EST: ACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAG ATCTACCCTCCGATCAATGTCCTGCCATCTTTGTCCCGTCTCATGAAGEST: gi|116450411|gb|EG493003.1|EG493003
genomic: ACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAGgtacactctt ... tgtttcacagATCTACCCTCCGATCAATGTCTTGCCATCTCTGTCTCGTCTCATGAAG
EST: ACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAG ATCTACCCTCCGATCAATGTCTTGCCATCTCTGTCTCGTCTCATGAAG
genomic: ACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAGgtacactctt ... tgtttcacagATCTACCCTCCGATCAATGTCTTGCCATCTCTGTCTCGTCTCATGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATCACGCATCCCACACCAGATCTGACAGGATACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAGgtacactctttcagaagatagttggttcaaagttcttatcataatcgatgttattacaacgtgaaaaattaacctgtatgagaaacctatatacctagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgagaaa