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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGATTTAGCCAAAGATTCTCATACGCCCGTCGATACAGAACTAGTCCATCTCCTGATCGATCTCCTTATCGCTTTAGTGATAGGAGTGACCGTGACAGgtgaatagcccacacataatataactccccctttctgttacacactctcgtactgaaccgtcttttttataacgtcttctctgtag

Basic information

species Arabidopsis thaliana
transcript AT4G32420.4
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116447362|gb|EG489954.1|EG489954
EST:     TCTCCTGATCGATCTCCTTATCGCTTTAGTGATAGGAGTGACCGTGACAG                         ATTTAGAAGTCGCAGAAGGTTCTCGCCAAGTCGGTTCAGAAGCCCACTAAG
genomic: TCTCCTGATCGATCTCCTTATCGCTTTAGTGATAGGAGTGACCGTGACAGgtgaatagcc ... ttctctgtagATTTAGAAGTCGCAGAAGGTTCTCGCCAAGTCGGTTCAGAAGCCCACTAAG
EST: gi|124997114|gb|EL069383.1|EL069383
EST:     TTTAGTGATAGGAGTGACCGTGACAG                         ATTTAGAAGTCGCAGAAGGTTCTCGCCAAGTCGGTTCAGAAGCCCACTAAG
genomic: TTTAGTGATAGGAGTGACCGTGACAGgtgaatagcc ... ttctctgtagATTTAGAAGTCGCAGAAGGTTCTCGCCAAGTCGGTTCAGAAGCCCACTAAG
EST: gi|116409463|gb|EG452055.1|EG452055
EST:     TCTCCTGATCGATCTCCTTATCGCTTTAGTGATAGGAGTGACCGTGACAG                         ATTTAGAAGTCGCAGAAGGTTCTCGCCAAGTCGGTTCAGAAGCCCACTAAG
genomic: TCTCCTGATCGATCTCCTTATCGCTTTAGTGATAGGAGTGACCGTGACAGgtgaatagcc ... ttctctgtagATTTAGAAGTCGCAGAAGGTTCTCGCCAAGTCGGTTCAGAAGCCCACTAAG
EST: gi|125196340|gb|EL211294.1|EL211294
EST:     GACCGTGACAG                         ATTTAGAAGTCGCAGAAGGTTCTCGCCAAGTCGGTTCAGAAGCCCACTAAG
genomic: GACCGTGACAGgtgaatagcc ... ttctctgtagATTTAGAAGTCGCAGAAGGTTCTCGCCAAGTCGGTTCAGAAGCCCACTAAG
EST: gi|116443354|gb|EG485946.1|EG485946
EST:     TCTCCTGATCGATCTCCTTATCGCTTTAGTGATAGGAGTGACCGTGACAG                         ATTTAGAAGTCGCAGAAGGTTCTCGCCAAGTCGGTTCAGAAGCCCACTAAG
genomic: TCTCCTGATCGATCTCCTTATCGCTTTAGTGATAGGAGTGACCGTGACAGgtgaatagcc ... ttctctgtagATTTAGAAGTCGCAGAAGGTTCTCGCCAAGTCGGTTCAGAAGCCCACTAAG