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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTATGGCGCTAGACATGTTCGTGATTTCACCTCATGGGTCTGTAAAGCATGCGAGAGACCAGATATCAAGCGGGAGTGTTGCCTCTGCCCTGTAAAAGgtggctttataaagtatattcagctttttcacataaacatatggcaccactgcctattaactatatccattggctccgctatgttgtcactgatgatag

Basic information

species Arabidopsis thaliana
transcript AT4G27910.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 13
TGCTATGGCGCTAGACATGTTCGTGATTTCACCTCATGGGTCTGTAAAGCATGCGAGAGACCAGATATCAAGCGGGAGTGTTGCCTCTGCCCTGTAAAAGgtggctttataaagtatattcagctttttcacataaacatatggcaccactgcctatt----aactatatccattggctccgctatgttgtcactgatgatag
|||||||| || ||| |||| || ||||| || || ||||| |||||||| ||||| ||||| || ||||||||||||||||| || || ||||||||||||   | | | |   |  ||||  | |||   ||| | |     || |  |   | |      |  || |  | | ||  | || || | ||  |  |     
TGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAAGCTTGCGAAAGACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGgtatgtctttgacaaaatttcaaatgtttggtatataaagtgatcatctttttttttccaggtatgatgtagactcgcctctctgtgatatctatttttt---

upper sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 13
TGCTATGGCGCTAGACATGTTCGTGATTTCACCTCATGGGTCTGTAAAGCATGCGAGAGACCAGATATCAAGCGGGAGTGTTGCCTCTGCCCTGTAAAAGgtggctttataaagtatattcagctttttcacataaacatatggcaccactgcctat-taactat-atccattggctccgctatgttgtcactgatgatag
|||||||| || ||| |||| || ||||| || || ||||| ||||| || || || | ||| || ||||||||||||||||| || || ||||||||||||   | | | |   |  ||||  | ||    ||| | |   | || |  |   |   |   ||| ||  |      || || || | ||  || |  | |
TGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAGGCTTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGgtatgtctttgacaaaatttcaaatgttgggtatataaagtggtcatcttttttttcctgggtatgatgtagacttacctctgtgatatctatgttt-tgg

upper sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 13
TGCTATGGCGCTAGACATGTTCGTGATTTCACCTCATGGGTCTGTAAAGCATGCGAGAGACCAGATATCAAGCGGGAGTGTTGCCTCTGCCCTGTAAAAGgtggctttataaagtatattcagctttttcac-ataaacatatggcaccactgcctattaactatatccattggctccgctatgttgtcactgatgatag
|| ||||| || ||| ||||||| |||||||| |||||||| || | |||||| || | ||| ||| |  |||||||||||||||| || ||||||||||||   ||   ||  |  |      | |      ||| | || |   |||    | |  |    || |  |||    | | | | |  | | | ||| |  
TGTTATGGGGCAAGAAATGTTCGGGATTTCACTTCATGGGTTTGCAGAGCATGTGAAACACCTGATGTTGAGCGGGAGTGTTGCCTTTGTCCTGTAAAAGgtatgttcccaagattgagaggaatctcaagttatagaaatgttaaaccttgacttgcttgtcatttatatttatgcagttttataatgaataatgtttt