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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCAGGTAAAGTGTTTCAAAATGCATTCCGCCAGAGAAAAATACCATTTAACGTTCATGGTGTTGCTTTCTACAGGAAAAAGgtagattgcctcagaaatatctcatttgttaaactgttgcatgatcactaagtatctcaatgttttgacattgacaattcatccgcatggttattgtagctttatttgtttcggacaataagctccatctactaaacataacagctatcaactttttccacgttag

Basic information

species Arabidopsis thaliana
transcript AT4G25120.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25120.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: LOC_Os07g30980.1 (Oryza sativa), 5'ss of exon 14
GTGTCAGGTAAAGTGTTTCAAAATGCATTCCGCCAGAGAAAAATACCATTTAACGTTCATGGTGTTGCTTTCTACAGGAAAAAGgtagattgcctcagaaatatctcatttgttaaactgttgcatgatcactaagtatctcaatgttttgacattgacaattcatccgcatggttattgtagctttatttgtttcggacaataagctccatctactaaacataacagctatcaactttttccacgttag
 |  | || ||||  || ||     |||||||| | |||||||| || |||||  |||||||||| ||||||||||||||||||||     || |     |  | | | |    | | | | ||    |  | |  | |    || | ||||  |||     | | | ||    ||||       | ||                                                             
ATCACTGGCAAAGCATTCCAGGCGTCATTCCGCAACAGAAAAATTCCTTTTAATATTCATGGTGTGGCTTTCTACAGGAAAAAGgt-----gcttggattaatttttactcccaatattatcgcggactagcaatttcttgtgatttcttga-gttgctttctta-ctgccaaattatcaatttataatcc-----------------------------------------------------------

upper sequence: AT4G25120.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G121427_T01 (Zea mays), 5'ss of exon 10
GTGTCAGGTAAAGTGTTTCAAAATGCATTCCGCCAGAGAAAAATACCATTTAACGTTCATGGTGTTGCTTTCTACAGGAAAAAGgtagattgcctcagaaatatctca---tttgttaaactg---ttgcatgatcactaagtatctcaatgttttgacattgacaattcatccgcatggttattgtagctttatttgtttcggacaataagctccatctactaaacataacagctatcaactttttccacgttag
 |  | || ||||  || |||    | |||||| | || ||||| || |||||| |||||||||| |||||||||||||||||||||| | |  | ||   | |  ||   || |||| | |     |||||||  |  || |||     |||    || |||||   |  |  |  | |||    |                                                                     
ATAACTGGCAAAGCTTTCCAAGTCTCCTTCCGCAACAGGAAAATTCCCTTTAACATTCATGGTGTGGCTTTCTACAGGAAAAAGgtagttggatttagttttcttccaagattcgttacagtaggagtgcatgaaaaacaactattcatgtgtccgaaccttgac---ttgttggttttgttgggtt---------------------------------------------------------------------

upper sequence: AT4G25120.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA20G34060.1 (Glycine max), 5'ss of exon 12
GTGTCAGGTAAAGTGTTTCAAAATGCATTCCGCCAGAGAAAAATACCATTTAACGTTCATGGTGTTGCTTTCTACAGGAAAAAGgtagattgcctcagaaatatctcatttgttaaactgttgcatgatcactaagtatctcaatgttttgacattgacaattcatccgcatggttattgtagctttatttgtttcggacaataagctccatctactaaacataacagctatcaactttttccacgttag
 | ||||||||||  || ||||  || |||||  | || ||||||||||||||| |||||||||| ||||| ||||| |||||||||  ||   |   ||  |    |    |  |  | |  | |  |  |||| |  ||   ||||   | ||| | | ||| |  |||||    |  || |||                                                                
ATATCAGGTAAAGCCTTCCAAATGGCTTTCCGTGATAGGAAAATACCATTTAACATTCATGGTGTGGCTTTTTACAGAAAAAAGgtaatttttttgccaatcaagataaagatgtatttatatcttactttctaattgact-gttgttaaaatattaata-ttcctaggcatgcac-taataactta---------------------------------------------------------------

upper sequence: AT4G25120.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv16s0013g00300.t01 (Vitis vinifera), 5'ss of exon 11
GTGTCAGGTAAAGTGTTTCAAAATGCATTCCGCCAGAGAAAAATACCATTTAACGTTCATGGTGTTGCTTTCTACAGGAAAAAGgtagattgcctcagaaatatctcatttgttaaactgttgcatgatcactaagtatctcaatgttttgacattgacaattc-atccgcatggtt-attgtagctttatttgtttcggacaataagctccatctactaaacataacagctatcaactttttccacgttag
|| || || ||||| || ||||  || || ||  | || || ||||| |||||| |||||||||| || |||||||||||||||||      | ||   |   ||  ||||   ||| ||||| |||  |  ||  |||   |   |||| | ||||| | ||  || | |||  ||   | |     |                                                               
GTATCTGGAAAAGTATTCCAAACAGCCTTTCGTGATAGGAAGATACCGTTTAACATTCATGGTGTGGCCTTCTACAGGAAAAAGgttatcaacatcctcatcctccaatttacaaaaatgttgtatg--cgatatttatgcaa---tttttatattgaaattttgattcccatcatttgctatgatcat---------------------------------------------------------------