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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCCTTGCCATATGAAGGAACCAGGAAGAGACGTAGAGCTGCTCTTGGGGATCATATTTGGAAAATTGGGGATAGGGTAGACTCGTGGGTGCATGACAGgtagtactgtctccataactagctgttttattggtctcccctaacagggatcagacaaaaccacaaaatctgtatatcaatttcagttttccgttttggaaatcctattcattccacgaagtttggaactttgatctatatttgttttgtttttcttcag

Basic information

species Arabidopsis thaliana
transcript AT4G17330.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G17330.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA11G03650.1 (Glycine max), 5'ss of exon 10
CTGCCTTGCCATATGAAGGAACCAGGAAGAGACGTAGAGCTGCTCTTGGGGATCATATTTGGAAAATTGGGGATAGGGTAGACTCGTGGGTGCATGACAGg-----tagtactgtctccat--aactagctgttttattggtctcc-cctaacagggatcagacaaaaccacaaaatctgtatatcaatttcagttttccgttttggaaatcctattcattccacgaagtttggaactttgatctatatttgttttgtttttcttcag
 | | || | |||||||||||| || |||||||||||||||||| | || ||| ||   |||    |||||||||| || ||  | ||| | || || |||     |  ||  | || | |  || ||||| | | |||| |  ||   | |     | |     ||   |     |  |||||| |       ||  |||                                                                   
ATACTTTACAATATGAAGGAACAAGAAAGAGACGTAGAGCTGCTATGGGAGATTATGCATGGTCTGTTGGGGATAGAGTTGATGCATGGATACAAGAAAGgtttgcttatatagacttcttttaattagctatgt-attgatggccatttcatcaataccctttgaagttattgtgtgcgtatattataacttcttcaccg-------------------------------------------------------------------

upper sequence: AT4G17330.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA01G41730.2 (Glycine max), 5'ss of exon 6
CTGCCTTGCCATATGAAGGAACCAGGAAGAGACGTAGAGCTGCTCTTGGGGATCATATTTGGAAAATTGGGGATAGGGTAGACTCGTGGGTGCATGACAGgtagtactgtctccataactagctgttttattggtctcccctaacagggatcagacaaaaccacaaaatctgtatatcaatttcagttttccgttttggaaatcctattcattccacgaagtttggaactttgatctatatttgttttgtttttcttcag
 | | || | |||||||||||| || |||||||||||||||||| | || ||| ||   |||    |||||||||| || ||  | ||| | || || ||||     ||  |  |||     || ||   | | | ||   | |  |  ||         |  ||| | |  |  |  | ||   || |     ||   | ||| |   ||||                                               
ATACTTTACAATATGAAGGAACAAGAAAGAGACGTAGAGCTGCTATGGGAGATTATGCATGGTCTGTTGGGGATAGAGTTGATGCATGGATACAAGAAAGgt----ttgcttatatagacttcttttaattagctatctattgatggccattt-------cttcaataccctttga--agttattgtgtgtatattataacatcttcaccatt-----------------------------------------------