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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCATTGCCACCAATGCCCGAGGATGGGGATACATGGTCTGTGATGCAGAGCTGGGCATTGCCAACAAGATCCTTCTTAGAGTTTGTCATGTTCTCAAGgtacttgtttaccacattacccattgattgtctcagtcttagcctctttggagaaagaagagtgcttaagagtgtgttttcccatctgtttgtag

Basic information

species Arabidopsis thaliana
transcript AT4G01210.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G01210.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: LOC_Os01g43380.1 (Oryza sativa), 5'ss of exon 7
ACTCATTGCCACCAATGCCCGAGGATGGGGATACATGGTCTGTGATGCAGAGCTGGGCATTGCCAACAAGATCCTTCTTAGAGTTTGTCATGTTCTCAAGgtacttgtttaccacattacccattgattgtctcagtcttagcctctttggagaaagaagagtgcttaagagtgtgttttcccatctgtttgtag-----
|  |  |||||| ||||||  | ||||| || || |||||||||||||| |||||||  ||||| || ||||| ||| | || ||||| ||||||||||||| |   ||  |    ||     |  || |||    |   ||  |     |  | |    | |   |||  ||  || |   ||| |    | |      
ATACCCTGCCACTAATGCCTAATGATGGAGACACTTGGTCTGTGATGCAAAGCTGGGTTTTGCCTACGAGATCATTCCTGGAATTTGTAATGTTCTCAAGgtgcacattatctcttttggaattcaatagtcaacatagcagtattaagtggaagatgtcactagctaactgttggtgtatacatttcaaagcacaagta

upper sequence: AT4G01210.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA07G06780.2 (Glycine max), 5'ss of exon 11
ACTCATTGCCACCAATGCCCGAGGATGGGGATACATGGTCTGTGATGCAGAGCTGGGCATTGCCAACAAGATCCTTCTTAGAGTTTGTCATGTTCTCAAGgtacttgtttaccacattacccattgattgtctcagtcttagcctctttggagaaagaagagtgcttaagagtgtgttttcccatctgtttgtag
| || ||||| || ||||| |  ||||| || ||||||||||| |||||||| |||||  |||| |||||||||||  | |||||||| |||||||| |||||         ||  ||  |   | |     |   |||        |||  || ||   | |   | |   ||     | |||| |||  | ||
ATTCTTTGCCTCCCATGCCGGTAGATGGTGACACATGGTCTGTCATGCAGAGTTGGGCTATGCCTACAAGATCCTTTATGGAGTTTGTAATGTTCTCCAGgtaaactaagttcattttgtcagctaagaaaattgttctcttgtaacttgttgagagttaaataactga---tgcaagctaccatttgt--gcag

upper sequence: AT4G01210.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv15s0046g01620.t01 (Vitis vinifera), 5'ss of exon 12
ACTCATTGCCACCAATGCCCGAGGATGGGGATACATGGTCTGTGATGCAGAGCTGGGCATTGCCAACAAGATCCTTCTTAGAGTTTGTCATGTTCTCAAGgtacttgtt-taccacattacccattgattgtctcagtcttagcctctttggagaaagaagagtgcttaagagtgtgttttcccatctgtttgtag
| || || ||||| ||||| |  ||||| ||| |||||||||| |||||||||||||| ||||||||  |||||||| |||||||||| |||||||||||||||| | | || ||  | |    |  ||     ||   ||||||  |||           | |  | |   |  | || | |||||||       
ATTCCTTACCACCTATGCCTGTAGATGGAGATGCATGGTCTGTCATGCAGAGCTGGGCTTTGCCAACCCGATCCTTCCTAGAGTTTGTAATGTTCTCAAGgtactggatatagcaattgaggggtgtatacaggcaagtttagcccatttttcatctttcaaatcttaatttgaatattgtaccatctgcag----