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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGAGAATGTCATTTTCGGCAAGCGCAGAGTTTCCGTGTTTTGAGCCTACACCCCAGGCTCAGACTATACTACATTGCCTGCTCCGTCACCTCCTTCAGgtattgttggtcctggcttctcttttcttaagttagaatgatcccttctttcttcctttattcatttctcctttgcaattttttttttctctcagaatcttattctgtttttctcttattttggacag

Basic information

species Arabidopsis thaliana
transcript AT3G61480.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61480.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv15s0046g01890.t01 (Vitis vinifera), 5'ss of exon 12
TCAGAGAATGTCATTTTCGGCAAGCGCAGAGTTTCCGTGTTTTGAGCCTACACCCCAGGCTCAGACTATACTACATTGCCTGCTCCGTCACCTCCTTCAGgtattgttggtcctggcttctcttttcttaagttagaatgatcccttctttcttcctttattcatttctcctttgcaattttttttttctctcagaatcttattctgtttttctcttattttggacag
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CCAGAGAATGTCATTTACATCAGGCACAGAGTTCCCATGTTTTGAGCCATCTCCTCAAGCTCAAACTATTCTGCATTGCCTACTCCGGCACCTTCTTCAGgtagcat---ttttgccatctaat---gaaaacttgaatg----cttattgtgtatagaatctatagatcatgtggaaatcgatgcatgttctggaaattt-tcttgcatt-----------------