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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAAGCTAATGATAAATATGTTGATTCCCCACCTCCGTATCTCATTCTTCTGCATCCTGCCCTCGGCCCTCTTTGGGAAGTTTCGAGACAGAAAgtaagtcagtagaagatgcctgtcttcttttgtttcttgattcacaaattctagcatatcatttattatgactaaaatcatatatgaatcgttgttacag

Basic information

species Arabidopsis thaliana
transcript AT3G56040.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G56040.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA18G02900.1 (Glycine max), 5'ss of exon 12
ATTGAAGCTAATGATAAATATGTTGATTCCCCACCTCCGTATCTCATTCTTCTGCATCCTGCCCTCGGCCCTCTTTGGGAAGTTTCGAGACAGAAAgtaagtcagtagaagatgcctgtcttcttttgtttcttgattcacaa-----attctagcatatcatttattatgactaaaatcatatatgaatcgttgttacag
||||||||||| || || |||||||||||   ||| || | |||||| |||||||||||||| ||||| ||||||||||||||  | |  || ||||||   | ||  |  |||  | | ||    |  || || ||  | |      ||| | |||| |  ||   |||   |||||| ||  | |  |  |||      
ATTGAAGCTAACGAGAACTATGTTGATTCGGGACCACCATTTCTCATCCTTCTGCATCCTGCTCTCGGTCCTCTTTGGGAAGTCACTAAGCAAAAAgtagcactgtttatcatgt-tatttttcagtagttattcatcaatagttgtcatttttgcatttgtttgtgtatctttaaaattatggaagtttgattgaa----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124990200|gb|EL062469.1|EL062469
EST:     -TCTTCTGCATCCTGCCCTCGGCCCTCTTTGGGAAGTTTCGAGACAGAAA                         TTCAAGGGAGGGTCCATTTCCAGTTGCTCAGAACTGCAACTAG
genomic: TTCTTCTGCATCCTGCCCTCGGCCCTCTTTGGGAAGTTTCGAGACAGAAAgtaagtcagt ... gttgttacagTTCAAGGGAGGGTCCATTTCCAGTTGCTCAGAACTGCAACTAG