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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGAGTGAACGTTGCTTGCTCCTCAAATTTGTGACTAGTTGTTCTCGGGCACCACTCCTTGGTTTCAAATACTTGCAGCCAACCTTCATCATCCATAAAgtttgtttttgaacttaagcttagaaatgtatgtttgatattctgtttggtaattttgttttcttacttttgtgctttttcatcttctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G53090.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53090.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA03G34650.1 (Glycine max), 5'ss of exon 13
ACCGAGTGAACGTTGCTTGCTCCTCAAATTTGTGACTAGTTGTTCTCGGGCACCACTCCTTGGTTTCAAATACTTGCAGCCAACCTTCATCATCCATAAAgtttgtttttgaacttaagcttagaaatgtatgtttgatattctgtttggtaattttgttttcttacttttgtgctttttcatcttctgcag-------------
||| |  || || ||  |||| || |||||||| || ||||||||||| || ||| | ||||| |||||||||||||||||| | || | |||||| || ||   || |||| |||    |     | |    ||  | ||  | | |  ||| |    | | || |  || |||||| |  ||||     |             
ACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGgt--attcttgatctttta-tggttgacggggattcaaaatcatttatactaactcctctatgttcccattttgctttgt--tcttaaaatgattaaagcatgct

upper sequence: AT3G53090.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA19G37310.2 (Glycine max), 5'ss of exon 14
ACCGAGTGAACGTTGCTTGCTCCTCAAATTTGTGACTAGTTGTTCTCGGGCACCACTCCTTGGTTTCAAATACTTGCAGCCAACCTTCATCATCCATAAAgtttgtttttgaacttaagcttagaaatgtatgtttgatattctgtttggtaattttgttttcttacttttgtgctttttcatcttctgcag---------
||| |  || || ||  |||| || |||||||| || ||||||||||| || ||| | ||||| |||||||||||||||||| | || | |||||| || || |||| |||| |||    | |   |||    ||  | ||  | | |  ||| |    | | || |  || |||||| |  |    ||            
ACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCCCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGgtatgttcttgatctttta-tgattgatgggcattcaaaatcatttatactaactcctctatgttcccattttgctttgttcttaaatgattaaagcttgg