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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGAATATAAATACATCATAGATGGTGAATGGACACACAATGAGGCCGAACCGTTTATAGGACCTAACAAAGACGGCCATACCAACAATTACGCTAAAgtaaaaatgtctctgtctcttaacatatagctgaacaagttttgatgaatgagttaatgctgtaatgttgttgtgtactaatgaattag

Basic information

species Arabidopsis thaliana
transcript AT3G52180.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084027|gb|DR379786.1|DR379786
EST:     AACCGTTTATAGGACCTAACAAAGACGGCCATACCAACAATTACGCTAAA                         GTAGTGGACGATCCAACAAGTGTGGATGGTACAACTCGGGAGAGACTATCG
genomic: AACCGTTTATAGGACCTAACAAAGACGGCCATACCAACAATTACGCTAAAgtaaaaatgt ... aatgaattagGTAGTGGACGATCCAACAAGTGTGGATGGTACAACTCGGGAGAGACTATCG
EST: gi|124964009|gb|EL038305.1|EL038305
EST:     AACCGTTTATAGGACCTAACAAAGACGGCCATACCAACAATTACGCTAAA                         GTAGTGGACGATCCAACAAGTGTGGATGG
genomic: AACCGTTTATAGGACCTAACAAAGACGGCCATACCAACAATTACGCTAAAgtaaaaatgt ... aatgaattagGTAGTGGACGATCCAACAAGTGTGGATGG
EST: gi|124896699|gb|EH972913.1|EH972913
EST:     AACCGTTTATAGGACCTAACAAAGACGGCCATACCAACAATTACGCTAAA                         GTAGTGGACGATCCAACAAGTG
genomic: AACCGTTTATAGGACCTAACAAAGACGGCCATACCAACAATTACGCTAAAgtaaaaatgt ... aatgaattagGTAGTGGACGATCCAACAAGTG