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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATCTATTAGCATCTGGGAAACCTTATTATGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAGgtaaagacgttaacagtctcacattataattaatcaaattcttgtcactcgtctgattgctacactcgcttctataaactgcag

Basic information

species Arabidopsis thaliana
transcript AT3G51820.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125022994|gb|EL095263.1|EL095263
EST:     ATTATGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAG                         TTTAAATACTTTCTCAAGG
genomic: ATTATGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAGgtaaagacgt ... taaactgcagTTTAAATACTTTCTCAAGG
EST: gi|125306687|gb|EL320772.1|EL320772
EST:     ATTATGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAG                         TTTAAAATACTTTCTCAAGGACCCTGTCAAATACGACG
genomic: ATTATGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAGgtaaagacgt ... taaactgcagTTTAAA-TACTTTCTCAAGGACCCTGTCAAATACGACG
EST: gi|125269365|gb|EL283450.1|EL283450
EST:     TGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAG                         TTTAAATACTTT
genomic: TGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAGgtaaagacgt ... taaactgcagTTTAAATACTTT
EST: gi|125048365|gb|EL120634.1|EL120634
EST:     ATTATGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAG                         TTTAAATACTTTCTCAAGGACCCTGT
genomic: ATTATGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAGgtaaagacgt ... taaactgcagTTTAAATACTTTCTCAAGGACCCTGT
EST: gi|125007977|gb|EL080246.1|EL080246
EST:     ATTATGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAG                         TTTAAATACTTTCTCAAGGACCCTGTCAAATACGACGTCAAGTACCAGGCA
genomic: ATTATGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAGgtaaagacgt ... taaactgcagTTTAAATACTTTCTCAAGGACCCTGTCAAATACGACGTCAAGTACCAGGCA