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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAACgtatggtttttcatgaaccagaaattgtctgcttaaatgcatgcagcctccggagtcaaattaactaatcataaatttttcttcattctctgttcag

Basic information

species Arabidopsis thaliana
transcript AT3G44200.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86062641|gb|DR358398.1|DR358398
EST:     AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAAC                         GCCTCCGAGATTTTGAAGCATCC
genomic: AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAACgtatggtttt ... ctctgttcagGCCTCCGAGATTTTGAAGCATCC
EST: gi|86062640|gb|DR358397.1|DR358397
EST:     AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAAC                         GCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATATGTTGAGCAGTAC
genomic: AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAACgtatggtttt ... ctctgttcagGCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATATGTTGAGCAGTAC
EST: gi|86062638|gb|DR358395.1|DR358395
EST:     AAGCACTCATCAAGGGAA----A-GGAAGAACCCCGAGTATCGGCCAAAC                         GCCTCCGAGATTTTGAAGCATCCTTAT
genomic: AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAACgtatggtttt ... ctctgttcagGCCTCCGAGATTTTGAAGCATCCTTAT
EST: gi|86062636|gb|DR358393.1|DR358393
EST:     GCACTCATTCAAGGGAATGGTTAAGGAAGAACCCCGAGTATCGGCCAAAC                         GCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATAT
genomic: GCACTCAT-CAAGGGAATG-TTAAGGAAGAACCCCGAGTATCGGCCAAACgtatggtttt ... ctctgttcagGCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATAT
EST: gi|86062639|gb|DR358396.1|DR358396
EST:     AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAAC                         GCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATATGTTGA
genomic: AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAACgtatggtttt ... ctctgttcagGCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATATGTTGA
EST: gi|86062637|gb|DR358394.1|DR358394
EST:     AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAAC                         GCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATATGTTGAGCAGTAC
genomic: AAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAACgtatggtttt ... ctctgttcagGCCTCCGAGATTTTGAAGCATCCTTATCTGCAGCCATATGTTGAGCAGTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAAGCACTCATCAAGGGAATGTTAAGGAAGAACCCCGAGTATCGGCCAAACgtatggtttttcatgaaccagaaattgtctgcttaaatgcatgcagcctccggagtcaaattaactaatcataaatttttcttcattctctgttcag

- - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - AAGAAC