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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAGgttattaaatgatcaaactttatcttcctatactcaactacattatttactagcttctttgttcatagttttaactatgagatgatctctcaaatacattgatcag

Basic information

species Arabidopsis thaliana
transcript AT3G26440.4
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G26440.4 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA11G37770.1 (Glycine max), 5'ss of exon 13
CCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAGgttattaaatgatcaaactttatcttcctatactcaactacattatttactagcttctttgttcatagttttaactatgagatgatctctcaaatacattgatcag
|||||||||||||||||||| ||||| |||||||| |||||  |||| |||   ||||| ||  |||| |  |||||  ||   | | ||    |    |  |||  ||  | |  |  | | |  | |   ||   | | |     ||||||    |   || |    | ||        
CCTGCACATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTATTCCCTCACTAGGGAATCAGgtattttctttaccatgagtc-catgactactctagagtctaagactaa--aacaatttcactaaaaa----aactat----tctccttttctctgcag-------

upper sequence: AT3G26440.4 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA18G01710.1 (Glycine max), 5'ss of exon 13
CCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAGgttattaaatgatcaaactttatcttcctatactcaactacattatttactagcttctttgttcatagttttaactatgagatgatctctcaaatacattgatcag
||||| |||||||||||||| ||||| |||||||| |||||  |||| |||    |||| ||  |||| |  |||||  ||   |  |||    | || |  ||| |||  ||    ||| | |  |   |   |||   |  |  | | ||  |     | |||                
CCTGCCCATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAGgtactttgtttgtca----tgatttctctagacttgacatttttactcaaaaatctggctgtaatttatgcttattaatattccttttctttgcag----------

upper sequence: AT3G26440.4 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv14s0036g00790.t01 (Vitis vinifera), 5'ss of exon 1
-------------------------CCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAGgttattaaatgatcaaactttatcttcctatactcaactacattatttactagcttctttgttcatagtttta-actatgagatgatctctcaaatacattgatcag----
                         ||||| |||||||| ||||| ||||| ||||||||||||||| |||||||||   |||| |   | || | |||||| | | |       ||   | |  | ||| | |    ||  |||| ||   | ||  |  |  | || | ||    ||   ||  |     ||  |   || |       
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTTGCTCGGGAACCAGgtaaatcatcttcagaaaaattttctactacattt--ttat-ttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccattatgtttttatag

upper sequence: AT3G26440.4 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 5'ss of exon 8
CCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAGgttattaaatgatcaaactttatcttcctatactcaactacattatttactagcttctttgttcatagttttaactatgagatgatctctcaaatacattgatcag---------
||||| |||||||| ||||| ||||| |||||||||||||||||||||||||   |||| ||  | || | |||||| | | |       ||   | |  | ||| | |        |||||||        |||  | ||      | |||||| ||    |     |   |  | |  |         
CCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaaattttctactacattt-------ttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag

upper sequence: AT3G26440.4 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 13
CCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAGgttattaaatgatcaaactttatcttcctatactcaactacattatttactagcttctttgttcatagttttaactatgagatgatctctcaaatacattgatcag---------
||||| |||||||| ||||| || || ||||||||||||||| |||||||||   |||| ||  | || | |||||| | | |       ||   | |  | ||| | |        |||||||      | |||  | ||      | |||||| ||    |     ||  |  | |  |         
CCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaatcatcttcagaaaacttttctactacattt-------ttatttatataaatgttttgtaatgaaaagatctatgaaatagaatactggattaaccgctatgtttttatag

upper sequence: AT3G26440.4 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv17s0000g02780.t01 (Vitis vinifera), 5'ss of exon 1
-------------------------CCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAGgttattaaatgatcaaactttatcttcctatactcaactacattatttactagcttctttgttcatagttttaactatgagatgatctctcaaatacattgatcag---------
                         ||||| |||||||| ||||| ||||| ||||||||||||||| |||||||||   |||| ||  | || | |||||| | |||       ||   | |  | ||| | |        |||||||        |||  | ||      | |||||| ||    |     |   |  | |  |         
TGGAACTTCCTCGTCTTTGAAACAACCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAGgtaaataatcttcagaaaaattttctactacatt-------gttatttatataaacgttttgtaatgaaaagatctatgaaatagaatactggagtaaccgttatgtttttatag