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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCATTGCATGACTTTTTACATCTTGCAGAAGAGGAAAGCAAACCGTTGATATGGAATCCCCGTGTCAAGATCGCTCTTGGCACTGCACGTGCATTGGAgtaagtctttaaacatctcaatcacattattgctcaatataatagcatgcagcagagtctcatggaaagtattgttgttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G14350.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14350.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA19G45130.1 (Glycine max), 5'ss of exon 12
GCTCATTGCATGACTTTTTACATCTTGCAGAAGAGGAAAGCAAACCGTTGATATGGAATCCCCGTGTCAAGATCGCTCTTGGCACTGCACGTGCATTGGAgtaagtctttaaacatctca----atcacattattgct-caatataatagcatgcagcagagtctcatggaaagtattgttgttgttgcag----------
| ||| ||||||||||  | || ||  |||| ||  | || ||||| |||||||||||| ||||||||||||| ||| | || |||||||||||  | ||||||||   |      || |    || | |  |||  | || || | |  | ||  | |   || |||  ||   ||  |   | ||  |           
GATCACTGCATGACTTCCTTCACCTATCAGATGAATATAGTAAACCATTGATATGGAATTCCCGTGTCAAGATTGCTTTGGGGACTGCACGTGCTCTAGAgtaagttagttgtgggctaatgggattagaagattcttacactacattttcgtgaggaaatttcacatt-aattcatgatcaatatttgaatcatataaat

upper sequence: AT3G14350.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA03G42360.1 (Glycine max), 5'ss of exon 14
GCTCATTGCATGACTTTTTACATCTTGCAGAAGAGGAAAGCAAACCGTTGATATGGAATCCCCGTGTCAAGATCGCTCTTGGCACTGCACGTGCATTGGAgtaagtctttaaacatctcaatcacattatt-gctcaatataata-gcatgcagcagagtctcatggaaagtattgttgttgttgcag--------------
| ||| ||||||||||  | || ||  |||| ||  | || ||||| |||||||||||| | ||||||||||| ||| | || |||||||||||  | ||||||||   |      || |||    |||   | ||  || | ||    |    ||     |||||   | |||| ||  | ||  |               
GATCACTGCATGACTTCCTTCACCTACCAGATGAATATAGTAAACCATTGATATGGAATTCGCGTGTCAAGATTGCTTTGGGGACTGCACGTGCTCTAGAgtaagttagttgtgggct-aatggggttagaagatccttacactacatttttgtcattaattcatgatcaatatt-ttaatcttataaatcattttccccca