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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTTGTCAGGCTTCATTTGGGCCAGAAGATTGGCCCCTCCATGTTCTAAACCAACAACCCCGCGACCTTCCTGCTCTTCTTCAGAAACTTCATTCAGGgtatgaataacgactactgggaaaatttctttgtcctttctgtagagagctacagcccaacttactgttttattcctggcgtag

Basic information

species Arabidopsis thaliana
transcript AT3G14120.3
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14120.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA07G04680.1 (Glycine max), 5'ss of exon 8
ATGGTTGTCAGGCTTCATTTGGGCCAGAAGATTGGCCCCTCCATGTTCTAAACCAACAACCCCGCGACCTTCCTGCTCTTCTTCAGAAACTTCATTCAGGgtatgaataacgactactgggaaaatttctttgtcctttctgtagagagctacagcccaacttactgttttattcctggcgtag
 |   | | || ||||   ||| || ||| |||||||  | || ||| | || || ||||| ||  | ||  |  ||||||||||||||||||||||||||||    |    | |  |   | |  ||  ||||| ||  | |   |   || |   ||| |  |||||   || |     |||
GTTCCTTTGAGCCTTCTAATGGACCTGAAAATTGGCCAATTCAAGTTTTGAATCAGCAACCTCGACAACTCTCATCTCTTCTTCAGAAACTTCATTCAGGgtagctgtg-taattcttttcaca--tttgttgtctttgttatgctgttatatattacaaat--ctgttacctttccattttag

upper sequence: AT3G14120.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv09s0002g00840.t01 (Vitis vinifera), 5'ss of exon 7
ATGGTTGTCAGGCTTCATTTGGGCCAGAAGATTGGCCCCTCCATGTTCTAAACCAACAACCCCGCGACCTTCCTGCTCTTCTTCAGAAACTTCATTCAGGgtatgaataacgactactgggaaaatttctttgtcctttctgtagagagctacagcccaactta--------ctgttttattcctggcgtag
 ||  | |||| ||||  |||| |||||| |||||||  |||| || || |||||||||||  |  | ||| ||||||||||||||||||||||||||||||||  |||  ||| |||||     | |   |||  ||||   | || | ||       |  ||        || |||| |   ||   |||
GTGAGTCTCAGTCTTCTGTTGGACCAGAAAATTGGCCATTCCAAGTCCTGAACCAACAACCAAGGCAGCTTTCTGCTCTTCTTCAGAAACTTCATTCAGGgtatacata-tgac-actggttt--tgttgatgttatttccccacagtgatatcatttgatataaggcatttctattttctctgtgatctag