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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTTTCTGTGGCGTGTGGACAAGAGAGATTTTACTCTTTGGACCATCACTAGCACCACCACTTTGTTCTTTGGAATAGAGATTGGGGTCCTCATTGGTgtgagtatgctcatactcactcagctttatttctgtagctgatcatatctctttgaaattaaaaggagtgatgatgttgaaagtagtataaccacctacatgaattgtgcaacgcttttaaaggactcacagagttgtaatgcttggaatttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G12520.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12520.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA18G52270.1 (Glycine max), 5'ss of exon 12
AATCTTTCTGTGGCGTGTGGACAAGAGAGATTTTACTCTTTGGACCATCACTAGCACCACCACTTTGTTCTTTGGAATAGAGATTGGGGTCCTCATTGGTgtgagtatgctcatactcactcagctttatttctgt-agctgatcatatct-ctttgaaattaaaaggagtgatgatgttgaaagtagtataaccacctacatgaattgtgcaacgcttttaaaggactcacagagttgtaatgcttggaatttttcag
 || ||| |||||||||| || |||| |||||||  |||||||||||| |||||||| || || |||||| |||| || ||||||||||||||  |||| |||||||    ||   | | |    ||| ||||||| ||    | ||   | | ||  ||||  ||  | |     | |      ||| ||     | ||  |  ||                                                    
-ATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGGGTCCTTGTTGGGGtgagta----caaggtgattt--ttttttttctgttagtaagtaatgggtgcattataattgcaaaaactttctttttcacttttagaatctgttcataatttgat----------------------------------------------------

upper sequence: AT3G12520.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA02G10590.1 (Glycine max), 5'ss of exon 12
AATCTTTCTGTGGCGTGTGGACAAGAGAGATTTTACTCTTTGGACCATCACTAGCACCACCACTTTGTTCTTTGGAATAGAGATTGGGGTCCTCATTGGTgtgagtatgctcatactcactcagctttatttctgtagctg-atcatatctctttgaaattaaaaggagtgatgatgttgaaagtagtataaccacctacatgaattgtgcaacgcttttaaaggactcacagagttgtaatgcttggaatttttcag
 || ||| |||||||||| || |||| |||||||  |||||||||||| |||||||| || || |||||| |||| || |||||||| |||||  |||| |||||||    ||   | | |    ||| ||  |   | || ||||||  |  || | |||   | |  | |   |  ||||  |   ||    | ||   ||                                                       
CATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGCGTCCTTGTTGGGgtgagta----caaggtgatttt-ttttgttagtaagggtgcatcataagttgttcatattttgatgcataaacttagtgaagctgaaatctttatctggttgtg-----------------------------------------------------