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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTTCTATGGCAGGATCTGTTTGCAATTTCCCAGGATCAGCCATTCCGTTTCCCATCAACTTTCACCTTTGTCATCCGAGCATTTTCCACACTTGAGGgtgcctattcaatctgttcttttatcttctttttgtaataatattccacaagtctcatcagttatgcttttgattttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G07700.3
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G07700.3 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA13G11270.1 (Glycine max), 5'ss of exon 13
TCCTTTCTATGGCAGGATCTGTTTGCAATTTCCCAGGATCAGCCATTCCGTTTCCCATCAACTTTCACCTTTGTCATCCGAGCATTTTCCACACTTGAGGgtgcctattcaatctgttcttttatcttctttttgtaataatattccacaagtctcatcagttatgcttttgattttgcag---------------------
               ||| | ||||||||  | || || |||||||||||||| ||||| || ||||||||||| ||  |||||||||| |||||||| |||   || ||  |    |    ||   | || |   |||       ||    |   |  | || |  | || | ||| |                       
---------------GATTTATTTGCAATAGCACAAGACCAGCCATTCCGTTTTCCATCTACCTTCACCTTTGTTATTAGAGCATTTTCTACACTTGAAGgt--ttactcccttctcttccctactcttttctctcaattggtgatcattctttgaagtatttttattctttaatttacccattgtatattattaatttaaa

upper sequence: AT3G07700.3 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: PP1S250_25V6.1 (Physcomitrella patens), 5'ss of exon 13
TCCTTTCTATGGCAGGATCTGTTTGCAATTTCCCAGGATCAGCCATTCCGTTTCCCATCAACTTTCACCTTTGTCATCCGAGCATTTTCCACACTTGAGGgtgcctattcaatctgttctttt--------------atcttc----tttttgtaataata---ttcca--caagtc----tcatcagtt-------atgcttttgattttgcag------------------------------------------------------------------------------
               ||| ||||||||||  |   |||||| ||||||||||||||| | |||||||| || ||  |||| |||||||| |||||||| |||  ||| | | |   | |  ||               |||||     |||| || |||||   || ||  |||| |    |||  ||||       |||||| | | || |||                                                                               
---------------GATTTGTTTGCAATAGCGGTGGATCAACCATTCCGTTTCCCAGCTACTTTCACGTTCGTGCTCCGGGCATTTTCTACACTTGAAGgtttctacttatttcataccctttcgctagcgatgttgtcttcaaagcttttatactaatacattttcatgcaagacaaattcacgagttggaacttatgcttctcagttcgcaagaatgggctacaaaatgctgaatttaacattcttctgaaagctcgtgatggcatatgacgcgtcttgtgaatcggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125296703|gb|EL310788.1|EL310788
EST:     TTTCCCATCAACTTTCACCTTTGTCATCCGAGCATTTTCCACACTTGAGG                         GTATTGGTTACATCCTTGATCCAGAATTTTCCTTTGTGAAGGCTGCGGCT
genomic: TTTCCCATCAACTTTCACCTTTGTCATCCGAGCATTTTCCACACTTGAGGgtgcctattc ... gattttgcagGTATTGGTTACATCCTTGATCCAGAATTTTCCTTTGTGAAGGTTGCGGCT