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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGATGGTTTTCGATTAGTTTTGTGGTTTGGCCGGATGCTTTCACCTGACATTGCTAAAAATCTTCTTGGGGTTGACTTTGCAGCAGACCTCTCAAGGgtatgtatttttatccacatatatccttacatatgaatatatgaacaggcggtacattcgatgatgtatatgcatcattagtgtttttcaagaatttgaaacatgataatatgtgtgaaacccttgtctttcttcgtgttgggtctcttag

Basic information

species Arabidopsis thaliana
transcript AT3G07100.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G07100.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv19s0014g01900.t01 (Vitis vinifera), 5'ss of exon 12
TGATGATGGTTTTCGATTAGTTTTGTGGTTTGGCCGGATGCTTTCACCTGACATTGCTAAAAATCTTCTTGGGGTTGACTTTGCAGCAGACCTCTCAAGGgtatgtatttttatccacatatatccttacatatgaatatatgaacaggcggtacattcgatgatgtatatgcatcattagtgtttttcaagaatttgaaacatgataatatgtgtgaaacccttgtctttcttcgtgttgggtctcttag
||||||||||||||| || ||| | ||||||||  | |||||||||||||| || ||||  ||||| ||||||   |||||||| || ||  | || | ||| |||  ||| ||    | ||    |||   || ||||         ||  || | |    | | |||||   |  | |  || | | |   |   | |  |  || | ||                                       
TGATGATGGTTTTCGCTTTGTTATTTGGTTTGGAAGAATGCTTTCACCTGAAATAGCTATGAATCTACTTGGGCAAGACTTTGCTGCTGATTTATCGAAGgtttgttctttcattagta-atggtttta---attaata---------gctttaaactatcaggtttatatcagttttaatggtgtattagagagagggaggacaatgagata--------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164078116|gb|ES182399.1|ES182399
EST:     TTGCAGCAGACCTCTCAAGG                         GTTACCTTTCAAGAGCAAGAGAATGGGATGTCAAAGAAGCTAATGAGGTTG
genomic: TTGCAGCAGACCTCTCAAGGgtatgtattt ... ggtctcttagGTTACCTTTCAAGAGCAAGAGAATGGGATGTCAAAGAAGCTAATGAGGTTG
EST: gi|125269434|gb|EL283519.1|EL283519
EST:     GCTAAAAATACTTCTTGGAGTTGACTTTGCAGCAGACCTCTCAAGG                         GTTACCTTTCAAGAGCAAGAGAATGGGATGTCAAAGAAGCTAATGAGGTTG
genomic: GCTAAAAAT-CTTCTTGGGGTTGACTTTGCAGCAGACCTCTCAAGGgtatgtattt ... ggtctcttagGTTACCTTTCAAGAGCAAGAGAATGGGATGTCAAAGAAGCTAATGAGGTTG
EST: gi|124779565|gb|EH869508.1|EH869508
EST:     TGGGGTTGACTTTGCAGCAGACCTCTCAAGG                         GTTACCTTTCAAGAGCAAGAGAATGGGATGTCAAAGAAGCTAATGAGGTTG
genomic: TGGGGTTGACTTTGCAGCAGACCTCTCAAGGgtatgtattt ... ggtctcttagGTTACCTTTCAAGAGCAAGAGAATGGGATGTCAAAGAAGCTAATGAGGTTG