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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTCACCGGATGAGAAAATAGACTTAAAGAAACAAGTAACCATTTGGTGGGCTGGTCTGATGCGTGGTGCAGTGTCAATGGCTCTTGCTTATAACCAGgttttgatccgtgaactacaagaaacaaagataaaaaagtgatctttgggttttaataagttcccatgacttaatctcttctctctgttacatcatag

Basic information

species Arabidopsis thaliana
transcript AT3G06370.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G063492_T01 (Zea mays), 5'ss of exon 13
GTCTTCACCGGATGAGAAAATAGACTTAAAGAAACAAGTAACCATTTGGTGGGCTGGTCTGATGCGTGGTGCAGTGTCAATGGCTCTTGCTTATAACCAGgttttgat--ccgtgaactacaagaaaca--aagataaaaaagtgatctttgggttttaataagttcccatgactt--aatctcttctctctgttacatcatag------------
                                     |||| ||| |||||||||||||| ||| | || ||||||||||| || ||||| |||||| ||||  || |  | | ||| |   |    |    |       |   ||| |||   | | | |   |   |||   |   |  ||||||| |    ||   |||              
-------------------------------------GTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTTGCCTATAACAAGgtgatgtttgcagcgaattctcatctgctttgaacctgctatcagatttttacatgtcattgcttgagcatctataggaggctcttctttacaataggccatgtaaaattttgcag

upper sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 11
GTCTTCACCGGATGAGAAAATAGACTTAAAGAAACAAGTAACCATTTGGTGGGCTGGTCTGATGCGTGGTGCAGTGTCAATGGCTCTTGCTTATAACCAGgttttgatccgtgaactacaagaaacaaagataaaaaa-----gtgatctttgggttttaataagttcccatgacttaatctcttctctctgttacatcatag
                                     ||||| ||||||||||||||||| ||||||||||| || || || || |||||||| || |||||           |||| ||        |  |    |      |  |  ||   |||||||  | |       |   ||  | ||| | || ||  |  ||  
-------------------------------------GTAACAATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTCTCTATCGCACTTGCTTACAATCAGgtgaaagaat-caaacttcattgcttttaattcttcatctcttgccactttcaagttttaaatactgttttctag--aacattttcacactattcaacaatca

upper sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 12
GTCTTCACCGGATGAGAAAATAGACTTAAAGAAACAAGTAACCATTTGGTGGGCTGGTCTGATGCGTGGTGCAGTGTCAATGGCTCTTGCTTATAACCAGgttttgatccgtgaactacaagaaacaaagataaaaaagtgatctttgggttttaataagttcccatgacttaatctcttctctctgttacatcatag---
                                     ||||| ||||||||||||||||| |||||||| || || || || || |||||||| || |||||   |       |||| ||       ||  |    |  |        ||  ||  ||    ||  |   ||| |||||| || |  |||  |  ||    
-------------------------------------GTAACTATTTGGTGGGCTGGTCTCATGCGTGGAGCTGTTTCTATCGCACTTGCTTACAATCAGgtgaaggaat-caaacttcattgctttaaattcttcatctctatggctggagttcttagtgcccgtttttttattctcttgtcacctttaagttttaaaaa

upper sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 13
GTCTTCACCGGATGAGAAAATAGACTTAAAGAAACAAGTAACCATTTGGTGGGCTGGTCTGATGCGTGGTGCAGTGTCAATGGCTCTTGCTTATAACCAGgttttgatccgtgaactacaagaaacaaagataaaaaagtgatctttgggttttaataagttcccatgacttaatctcttctctctgttacatcatag----
                                     || || ||||||||||||||||| ||||||||||| || || ||||| || |||||||| |||||        |     |          |||     | ||   |   |||  ||||| ||  ||   |    | || |        ||  | |   ||     
-------------------------------------GTCACAATTTGGTGGGCTGGTCTTATGCGTGGTGCTGTTTCTATGGCACTAGCTTATAATCAGgtaagacattggatgttgtccttttttaagggtttacagcattggatgg--tttaaaaatctcatgtagggtgatatgaatgtcatggaaaacactaaccta