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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTTCTGGAATGAGCCCTGCATATAATCGATATGGGTGCACTCTTATTGgtaaacctttcagctttatgagaacaaccagttgtgctaatatgattaccttggagtttggtttacatgaaagatttgtgttctttctttcaaataatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G05190.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05190.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv14s0128g00100.t01 (Vitis vinifera), 5'ss of exon 22
GTTACTTCTGGAATGAGCCCTGCATATAATCGATATGGGTGCACTCTTATTGgtaaacctttcagctttatgagaacaacca-gttgtgctaatatgattaccttggagtttggtttacatgaaagatttgtgttctttctttcaaataatgcag
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GTTACTTCTGGAATGAGCCCGGCATTCAATCTCTATGGATGCACTCTAATTGgtaa--ttttaatttctagtatatccccaatgttacaatggcatggctgatttaaatattctgtctttttaatgcatagtcacttgggctctatatcaaccg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164029915|gb|ES201645.1|ES201645
EST:     TACTTCTGGAATGAGCCCTGCATATAATCGATATGGGTGCACTCTTATTG                         TGCTTGCCGAATGGAAGACCTCCGGTATA
genomic: TACTTCTGGAATGAGCCCTGCATATAATCGATATGGGTGCACTCTTATTGgtaaaccttt ... aataatgcagTGCTTGCCGAATGGAAG-CCTCCGGTATA