Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCGAAACTCGGGGGATGTGCTTTCGTTTGTGGGTCATTAAGCTTCTTAGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAGgtaagtttttgtctttctttctaatattatcttaaaattgatggaagtctaatttggaaaatggtgcag

Basic information

species Arabidopsis thaliana
transcript AT2G44280.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G44280.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA08G16870.2 (Glycine max), 5'ss of exon 12
GGTTCGAAACTCGGGGGATGTGCTTTCGTTTGTGGGTCATTAAGCTTCTTAGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAGgtaagttt-ttgtctttctttctaatattatcttaaaattgatggaagtctaatttggaaaatggtgcag-------------------------------------------------------
||   ||| ||    || ||||| || |||  ||| ||||| || || || |||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||| ||   ||||||||       || || ||  | ||     | |  ||| | |||  |    |                                                       
GGAGAGAACCTTAATGGTTGTGCATTTGTTGTTGGATCATTGAGTTTTTTGGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttcttaaatttctttc-------atattgaacattatatgtctattgtttcgtaaacagcattgttactaatcatatcatttttctaatcatcatatattgttcaaatcatcaatgtag

upper sequence: AT2G44280.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA08G16870.4 (Glycine max), 5'ss of exon 9
GGTTCGAAACTCGGGGGATGTGCTTTCGTTTGTGGGTCATTAAGCTTCTTAGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAGgtaagttt-ttgtctttctttctaatattatcttaaaattgatggaagtctaatttggaaaatggtgcag---------------------------------------------------------------------
||   ||| ||    || ||||| || |||  ||| ||||| || || || |||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||| ||   ||||||||       || || ||  | ||     | |  ||| | |||  |    |                                                                     
GGAGAGAACCTTAATGGTTGTGCATTTGTTGTTGGATCATTGAGTTTTTTGGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttcttaaatttctttc-------atattgaacattatatgtctattgtttcgtaaacagcattgttactaatcatatcatttttctaatcatcatatattgttcaaatcatcaatgtagatctctctccgcag

upper sequence: AT2G44280.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA15G42210.1 (Glycine max), 5'ss of exon 12
GGTTCGAAACTCGGGGGATGTGCTTTCGTTTGTGGGTCATTAAGCTTCTTAGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAGgtaagtttttgtctttctttctaatattatcttaaaattgatggaagtctaatt--tggaaaatggtgcag---------------------------------
                                    ||||| ||||| || |||||||| ||||||||| |||||||||||||||| |||||| | ||| |||||||| |    ||  || || | ||||  |  | ||||      | |   |  |   | || || ||                                  
-----------------------------------ATCATTGAGCTTTTTGGACAAAATTTCATGTGGGATTGCTTTATATGTTCTCCAGTCAAACCAAAGTAAGTTTCTTAAATTTCTTTTA-TCTTATAGTGGAgttgaacatcatttttctaatcatatattgttcaaatcatcaatgtagatctctctccacagctccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116406008|gb|EG448600.1|EG448600
EST:     AGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAG                         GCACTTCACCAAAGGTTGACGTAAACATCAAAGAATATTTTTACTTCTCGG
genomic: AGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAGgtaagttttt ... aatggtgcagGCACTTCACCAAAGGTTGACGTAAACATCAAAGAATATTTTTACTTCTCGG
EST: gi|116399886|gb|EG442478.1|EG442478
EST:     AGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAG                         GCACTTCACCAAAGGTTGACGTAAACATCAAAGAATATTTTTACTTCTCGG
genomic: AGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAGgtaagttttt ... aatggtgcagGCACTTCACCAAAGGTTGACGTAAACATCAAAGAATATTTTTACTTCTCGG
EST: gi|116406007|gb|EG448599.1|EG448599
EST:     AGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAG                         GCACTTCACCAAAGGTTGACGTAAACATCAAAGAATATTTTTACTTCTCGG
genomic: AGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAGgtaagttttt ... aatggtgcagGCACTTCACCAAAGGTTGACGTAAACATCAAAGAATATTTTTACTTCTCGG